https://github.com/dogth/biomultitool
GUI for a few tools
https://github.com/dogth/biomultitool
bioinformatics bioinformatics-scripts
Last synced: about 1 year ago
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GUI for a few tools
- Host: GitHub
- URL: https://github.com/dogth/biomultitool
- Owner: Dogth
- License: gpl-3.0
- Created: 2023-03-15T21:50:46.000Z (about 3 years ago)
- Default Branch: main
- Last Pushed: 2024-05-19T00:30:46.000Z (about 2 years ago)
- Last Synced: 2025-01-30T02:44:49.556Z (over 1 year ago)
- Topics: bioinformatics, bioinformatics-scripts
- Language: JavaScript
- Homepage:
- Size: 66.8 MB
- Stars: 1
- Watchers: 1
- Forks: 0
- Open Issues: 1
-
Metadata Files:
- Readme: README.md
- License: LICENSE
Awesome Lists containing this project
README
# BioMultiTool
A simple wrapper for a few bioinformatics tools.
Currently supports only:
- [NCBI BLAST+](https://blast.ncbi.nlm.nih.gov/Blast.cgi)
- [Prodigal](https://github.com/hyattpd/Prodigal)
- [RiPP Rodeo](https://www.ripp.rodeo/)
- [Skani](https://github.com/bluenote-1577/skani)
## Installation&Running:
Requires docker and docker compose
git clone https://github.com/Dogth/biomultitool
cd ./biomultitool
docker-compose up
After running those command navigate to http://localhost:8080/ in your browser.
If you have any trouble running biomultitool please reach out to me.
In case you want to restart the tool on startup use ```docker-compose up --restart unless-stopped```
## Running on WSL (Ubuntu):
sudo apt-get update && sudo apt-get upgrade
sudo apt-get install docker-compose
sudo usermod -aG docker ${USER}
su - ${USER}
git clone https://github.com/Dogth/biomultitool
cd ./biomultitool
sudo dockerd &> dockerd.log &
docker-compose up
If you get ```MongoDB 5.0+ requires a CPU with AVX support, and your current system does not appear to have that!``` switch mongo version from latest to 4.4.18 in docker-compose file