https://github.com/dohlee/idat2beta

Small minfi wrapper to convert IDAT files to beta values.
https://github.com/dohlee/idat2beta

bioinformatics dna-methylation methylation-analysis

Last synced: about 2 months ago
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Small minfi wrapper to convert IDAT files to beta values.

• Host: GitHub
• URL: https://github.com/dohlee/idat2beta
• Owner: dohlee
• Created: 2020-01-08T09:51:02.000Z (almost 6 years ago)
• Default Branch: master
• Last Pushed: 2020-01-08T16:15:53.000Z (almost 6 years ago)
• Last Synced: 2025-07-23T23:48:38.022Z (3 months ago)
• Topics: bioinformatics, dna-methylation, methylation-analysis
• Language: R
• Homepage:
• Size: 0 Bytes
• Stars: 0
• Watchers: 2
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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README

          
# idat2beta

## Requirements

Create conda environment and activate it.

```

conda env create -f environment.yaml

conda activate minfi

```

## Quickstart

```

Rscript idat2beta.R -i data/GSM1234567 -o GSM1234567_beta.csv

```

`data/GSM1234567` should contain two IDAT files representing two-channel output (`*_Grn.idat` and `*_Red.idat`).