https://github.com/domenico-somma/papillon

A python module to read and plot Galaxy RNA-seq data
https://github.com/domenico-somma/papillon

cuffdiff cufflinks cummerbund galaxy-project genes heatmap isoforms plot rna-seq transcript

Last synced: 7 months ago
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A python module to read and plot Galaxy RNA-seq data

• Host: GitHub
• URL: https://github.com/domenico-somma/papillon
• Owner: domenico-somma
• License: mpl-2.0
• Created: 2017-12-13T22:55:17.000Z (over 8 years ago)
• Default Branch: master
• Last Pushed: 2018-09-24T15:04:57.000Z (over 7 years ago)
• Last Synced: 2025-08-19T06:40:06.474Z (10 months ago)
• Topics: cuffdiff, cufflinks, cummerbund, galaxy-project, genes, heatmap, isoforms, plot, rna-seq, transcript
• Language: Python
• Size: 271 KB
• Stars: 1
• Watchers: 1
• Forks: 1
• Open Issues: 1
• Metadata Files:
  • Readme: README.md
  • Changelog: CHANGE.txt
  • Contributing: CONTRIBUTING.md
  • License: LICENSE

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README

          
# Papillon

A python alternative to [cummeRbund](http://compbio.mit.edu/cummeRbund/) to read and plot [Galaxy](https://usegalaxy.org/)/cuffdiff RNA-seq data 

![Preview](https://user-images.githubusercontent.com/34346930/34152979-4c3dae42-e4a8-11e7-9259-005a016edb53.png)

[![PyPI version](https://badge.fury.io/py/papillon.svg)](https://pypi.python.org/pypi/papillon)

[![Python3](https://img.shields.io/badge/python-3-blue.svg)](https://www.python.org/)

[![Pandas](https://img.shields.io/badge/python%20module-pandas-blue.svg)](https://pandas.pydata.org/)

[![Seaborn](https://img.shields.io/badge/python%20module-seaborn-blue.svg)](https://seaborn.pydata.org/)

[![Build Status](https://travis-ci.org/domenico-somma/Papillon.svg?branch=master)](https://travis-ci.org/domenico-somma/Papillon)

[![codecov](https://codecov.io/gh/domenico-somma/Papillon/branch/master/graph/badge.svg)](https://codecov.io/gh/domenico-somma/Papillon)

## Installation

You can use Papillon with any Scientific IDE, and install it using Pypi:

    pip install papillon

or Anaconda with conda-forge channel:

    conda config --add channels conda-forge

    conda install papillon

## Usage

[Quick Tutorial](https://github.com/domenico-somma/Papillon/wiki/Quick-Tutorial).

[Wiki](https://github.com/domenico-somma/Papillon/wiki).