https://github.com/dominodatalab/cdisc01_study

https://github.com/dominodatalab/cdisc01_study

Last synced: 29 days ago
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• Host: GitHub
• URL: https://github.com/dominodatalab/cdisc01_study
• Owner: dominodatalab
• Created: 2023-09-22T18:04:41.000Z (over 1 year ago)
• Default Branch: prod
• Last Pushed: 2024-11-11T22:23:43.000Z (about 1 month ago)
• Last Synced: 2024-11-11T23:26:04.459Z (about 1 month ago)
• Language: SAS
• Size: 295 KB
• Stars: 0
• Watchers: 5
• Forks: 4
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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README

        
# Protocol CDISC01 Study Repo

This repo contains the study specfic ADaM and TFL code for the CDISC01 protocol.

Each reporting effort (Interim, Ad Hoc, CSR etc.) is a branch within this repo.

# Directory structure

The programming is created in a typical clinical trial folder structure, where the production (prod) and qc programs have independent directory trees.

Reporting effort level standard code (e.g. SAS macros) should be stored in the `share/macros` folder.

The global `domino.sas` autoexec progam is also included in the repository to appropriately set up the SAS environment. 

```

repo

│   domino.sas

├───prod

│   ├───adam

    ├───adam_flows

    ├───tfl

│   └───tfl_flows

├───qc

│   ├───adam

│   │       compare_adam.sas

    ├───adam_flows

    ├───tfl

│   └───tfl_flows

├───utilities

│       init_datasets_re.py

│       import_metadata.sas

├───flows

└───share

    └───macros

```

# Naming convention

The programs follow a typical clinical trial naming convention, where the ADaM programs are named using the dataset name (e.g. ADSL.sas, etc.) and the TFL programs have a `t_` prefix to indicate tables, etc.

# QC programming and reporting

The QC programming is all in SAS, and there is a `compare_adam.sas` program which uses SAS PROC COMPARE to create a summary report of all differences between the prod and qc datasets. This program also generates the `dominostats.json` files which Domino uses to display a dashboard in the jobs screen.

# Support

Programming was created by Veramed Ltd. on behalf of Domino Data Lab, Inc.