https://github.com/dominodatalab/clinical_data_management_template
Repo containing the directory structure and programs to create an SDTM project.
https://github.com/dominodatalab/clinical_data_management_template
clinical-programming demo-asset pharma sce
Last synced: 5 months ago
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Repo containing the directory structure and programs to create an SDTM project.
- Host: GitHub
- URL: https://github.com/dominodatalab/clinical_data_management_template
- Owner: dominodatalab
- Created: 2023-05-04T17:22:35.000Z (about 3 years ago)
- Default Branch: main
- Last Pushed: 2024-04-09T21:43:21.000Z (about 2 years ago)
- Last Synced: 2025-03-18T13:18:41.603Z (over 1 year ago)
- Topics: clinical-programming, demo-asset, pharma, sce
- Language: SAS
- Homepage:
- Size: 29.3 KB
- Stars: 0
- Watchers: 6
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
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README
# SCE_SDTM_TEMPLATE
This repo and corresponding Domino Project contains the folder structure to template a study wide SDTM project.
This repo project is copied by Data Management to instantiate a new study specfic SDTM GitHub repo and Domino Project.
# Directory structure
The programming is created in a typical clinical trial folder structure, where the production (prod) and qc programs have independent directory trees.
Reporting effort level standard code (e.g. SAS macros) should be stored in the `share/macros` folder.
The global `domino.sas` autoexec progam is also included in the repository to appropriately set up the SAS environment.
```
repo
│ domino.sas
├───prod
│ └───sdtm
├───qc
│ └───sdtm
└───utilities
init_datasets.py
└───share
└───macros
```
# Setup
1. Create a new project, named `CDISC01_SDTM`, from copying this project. This will create a new project and a new study specfic GitHub repo.
1. Run `utilities/init_datasets_sdtm.py` as a job to create the appropriate SDTM Domino Datasets (SDTMBLIND, SDTMUNBLIND and METADATA).
# Naming convention
The programs follow a typical clinical trial naming convention, where the SDTM programs are named after the datasets they are producing (e.g. DM.sas, AE.sas, etc...)
# Support
Programming was created by Veramed Ltd. on behalf of Domino Data Lab, Inc.