https://github.com/dominodatalab/clinical_data_management_template

Repo containing the directory structure and programs to create an SDTM project.
https://github.com/dominodatalab/clinical_data_management_template

clinical-programming demo-asset pharma sce

Last synced: 29 days ago
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Repo containing the directory structure and programs to create an SDTM project.

• Host: GitHub
• URL: https://github.com/dominodatalab/clinical_data_management_template
• Owner: dominodatalab
• Created: 2023-05-04T17:22:35.000Z (over 1 year ago)
• Default Branch: main
• Last Pushed: 2024-04-09T21:43:21.000Z (9 months ago)
• Last Synced: 2024-11-24T19:09:18.778Z (29 days ago)
• Topics: clinical-programming, demo-asset, pharma, sce
• Language: SAS
• Homepage:
• Size: 29.3 KB
• Stars: 0
• Watchers: 7
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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README

        
# SCE_SDTM_TEMPLATE

This repo and corresponding Domino Project contains the folder structure to template a study wide SDTM project.

This repo project is copied by Data Management to instantiate a new study specfic SDTM GitHub repo and Domino Project.

# Directory structure

The programming is created in a typical clinical trial folder structure, where the production (prod) and qc programs have independent directory trees.

Reporting effort level standard code (e.g. SAS macros) should be stored in the `share/macros` folder.

The global `domino.sas` autoexec progam is also included in the repository to appropriately set up the SAS environment. 

```

repo

│   domino.sas

├───prod

│   └───sdtm

├───qc

│   └───sdtm

└───utilities

        init_datasets.py

└───share

    └───macros

```

# Setup

1. Create a new project, named `CDISC01_SDTM`, from copying this project. This will create a new project and a new study specfic GitHub repo.

1. Run `utilities/init_datasets_sdtm.py` as a job to create the appropriate SDTM Domino Datasets (SDTMBLIND, SDTMUNBLIND and METADATA).

# Naming convention

The programs follow a typical clinical trial naming convention, where the SDTM programs are named after the datasets they are producing (e.g. DM.sas, AE.sas, etc...)

# Support

Programming was created by Veramed Ltd. on behalf of Domino Data Lab, Inc.