https://github.com/drhagen/biolucia

Prototype biological modeling toolbox
https://github.com/drhagen/biolucia

Last synced: 12 days ago
JSON representation

Prototype biological modeling toolbox

• Host: GitHub
• URL: https://github.com/drhagen/biolucia
• Owner: drhagen
• License: mit
• Created: 2015-10-30T10:29:29.000Z (about 9 years ago)
• Default Branch: master
• Last Pushed: 2017-10-04T00:36:11.000Z (about 7 years ago)
• Last Synced: 2024-10-30T03:27:53.070Z (about 2 months ago)
• Language: Python
• Homepage:
• Size: 61.5 KB
• Stars: 0
• Watchers: 3
• Forks: 1
• Open Issues: 0
• Metadata Files:
  • Readme: readme.md
  • License: license.txt

Awesome Lists containing this project

README

        
# Biolucia

This is a prototype simulation engine for biological models. At the moment, it is very crude and intended for experimentation, not for production use.

## Installation

(Thanks to Kevin Shi @xpspectre)

### Windows

1. Install [Anaconda with Python 3.5](https://www.continuum.io/downloads) package.

2. Make sure the right python and conda executables are on your path. I did the rest of this in the console emulator [cmder](http://cmder.net/).

3. Make a new conda env: `conda create --name biolucia numpy scipy matplotlib sympy` 

4. Activate the new conda env: `activate biolucia`  Make sure the python and pip executables point to the right ones.

5. Install more packages: `pip install aenum typing funcparserlib`

### Linux

It's the standard virtualenv and install from the following requirements.txt:

```

aenum==1.4.5

cycler==0.10.0

funcparserlib==0.3.6

matplotlib==1.5.1

mpmath==0.19

numpy==1.11.1

pyparsing==2.1.5

python-dateutil==2.5.3

pytz==2016.4

scipy==0.17.1

six==1.10.0

sympy==1.0

typing==3.5.2.2

```