https://github.com/dridk/qabifreader

Qt5 ABIF file reader for Genetic Analysis
https://github.com/dridk/qabifreader

Last synced: 19 days ago
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Qt5 ABIF file reader for Genetic Analysis

• Host: GitHub
• URL: https://github.com/dridk/qabifreader
• Owner: dridk
• License: gpl-2.0
• Created: 2015-04-30T23:40:36.000Z (over 9 years ago)
• Default Branch: master
• Last Pushed: 2015-05-01T17:08:43.000Z (over 9 years ago)
• Last Synced: 2024-05-01T21:19:20.673Z (8 months ago)
• Language: C++
• Size: 406 KB
• Stars: 2
• Watchers: 2
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

        
Qt5 ABIF file reader for Genetic Analysis 

======================================

[![License](https://img.shields.io/badge/license-GPLv2.1%2B-blue.svg)](https://img.shields.io/badge/license-GPL%203%2B-blue.svg)

QAbifReader is a [Qt](http://www.qt.io) library to load data from an abif file following the specification of [Abif file format](http://www6.appliedbiosystems.com/support/software_community/ABIF_File_Format.pdf).

It allows you to read all content of ab1 and fsa file. But it doesn't provide any widget to show data. You can do it easily using 

[QCustomPlot](http://www.qcustomplot.com/index.php/demos/datedemo)

### Example

![](https://raw.githubusercontent.com/dridk/QAbifReader/master/preview.png)

### Dependencies

Requires Qt 5.4 or higher 

Not tested on previous version, but it should work.

### Installation

Just copy abifreader.cpp and abifreader.h to your main project 

## Use

    AbifReader reader("file.fsa")

    QVariantList peaks = reader.data("Data.1").toList() 

  

  

## Full example 

      #include 

      #include "qcustomplot.h"

      #include "abireader.h"

      

      int main(int argc, char *argv[])

      {

          QApplication a(argc, argv);

          QCustomPlot * customPlot = new QCustomPlot;

         

          AbifReader r = AbifReader("/home/sacha/temp/M.fsa");

          QVariantList list = r.data("DATA.1").toList(); 

          QVector x(list.size()), y(list.size());

          QVector y(list.size());

    

          for (int i=0; iaddGraph();

          customPlot->graph(0)->setData(x, y);

      

          // give the axes some labels:

          customPlot->xAxis->setLabel("x");

          customPlot->yAxis->setLabel("y");

          

          customPlot->setInteraction(QCP::iRangeZoom,true);

          customPlot->setInteraction(QCP::iRangeDrag,true);

          customPlot->replot();

          customPlot->rescaleAxes();

          customPlot->show();

          customPlot->resize(800,400);

          return a.exec();

    }

    

    

## Thanks

Thanks [Tyler Smith](https://github.com/plantarum) for this [blog post](http://plantarum.ca/code/abi-part1/)   

Thanks [Yves Schutz](https://github.com/yschutz) to explain how bitwise works !