https://github.com/drostlab/seqstats

Biological Sequence Statistics in R
https://github.com/drostlab/seqstats

bioinformatics biological-data-analysis biological-sequence-statistics biological-sequences genomics

Last synced: 7 days ago
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Biological Sequence Statistics in R

• Host: GitHub
• URL: https://github.com/drostlab/seqstats
• Owner: drostlab
• Created: 2015-02-12T09:52:35.000Z (almost 10 years ago)
• Default Branch: master
• Last Pushed: 2020-04-26T13:06:30.000Z (over 4 years ago)
• Last Synced: 2024-11-02T16:42:14.348Z (16 days ago)
• Topics: bioinformatics, biological-data-analysis, biological-sequence-statistics, biological-sequences, genomics
• Language: R
• Homepage: https://drostlab.github.io/seqstats/
• Size: 50.8 KB
• Stars: 2
• Watchers: 4
• Forks: 1
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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README

        
seqstats

========

## Biological Sequence Statistics in R

The `seqstats` package provides a comprehensive framework for biological sequence statistics to allow researchers to design null hypotheses and random controls when performing exploratory genomics studies.

## Install

```r

if (!requireNamespace("BiocManager", quietly = TRUE))

    install.packages("BiocManager")

BiocManager::install()

# install package dependencies

BiocManager::install("Biostrings")

# install.packages("devtools")

# install the current version of seqstats to your system

devtools::install_github("HajkD/seqstats", build_vignettes = TRUE, dependencies = TRUE)

```

## Tutorials

The following tutorials will introduce you to the functionality of `seqstats` :

- [Sequence Statistics](https://drostlab.github.io/seqstats/articles/Statistics.html)

## Install on Windows

```r

# On Windows, this won't work - see ?build_github_devtools

install_github("HajkD/seqstats", build_vignettes = TRUE, dependencies = TRUE)

# When working with Windows, first you need to install the

# R package: rtools -> install.packages("rtools")

# Afterwards you can install devtools -> install.packages("devtools")

# and then you can run:

devtools::install_github("HajkD/seqstats", build_vignettes = TRUE, dependencies = TRUE)

# and then call it from the library

library("seqstats", lib.loc = "C:/Program Files/R/R-3.1.1/library")

```