https://github.com/drseb/phenopposites

Project to generate phenotype opposite_of relationships and investigate the effect on ontology-based algorithms
https://github.com/drseb/phenopposites

ontologies ontology phenomics phenotype phenotype-ontologies phenotypes phenotyping semantic-web semantics similarity-measures

Last synced: 3 months ago
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Project to generate phenotype opposite_of relationships and investigate the effect on ontology-based algorithms

• Host: GitHub
• URL: https://github.com/drseb/phenopposites
• Owner: drseb
• License: apache-2.0
• Created: 2017-02-16T08:55:48.000Z (about 9 years ago)
• Default Branch: master
• Last Pushed: 2017-10-04T14:27:20.000Z (over 8 years ago)
• Last Synced: 2025-04-09T03:35:40.396Z (about 1 year ago)
• Topics: ontologies, ontology, phenomics, phenotype, phenotype-ontologies, phenotypes, phenotyping, semantic-web, semantics, similarity-measures
• Homepage:
• Size: 19.5 KB
• Stars: 3
• Watchers: 0
• Forks: 2
• Open Issues: 5
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

          
# phenopposites

Project to generate phenotype opposite_of relationships in PATO, MPO and HPO. We also investigate the effect including this reltionship in ontology-based algorithms like semantic similarity.

 * lexically derived - these were obtained by looking for pairs of labels that differ according to an antonym pair (see [antonyms file](https://github.com/Phenomics/phenopposites/blob/master/antonyms/text-patterns.txt))

 * logically derived - using the OWL definitions in HP/MP, and the [is opposite of](http://purl.obolibrary.org/obo/RO_0002604) relationships in PATO. See for example [increased height](https://www.ebi.ac.uk/ols/ontologies/pato/terms?iri=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FPATO_0000570).

# publication

Currently there is only a preprint version for this project. See http://biorxiv.org/content/early/2017/02/16/108977