https://github.com/dynverse/babelwhale

Talking to Docker and Singularity containers
https://github.com/dynverse/babelwhale

Last synced: 4 months ago
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Talking to Docker and Singularity containers

• Host: GitHub
• URL: https://github.com/dynverse/babelwhale
• Owner: dynverse
• License: other
• Created: 2018-09-07T07:48:17.000Z (almost 8 years ago)
• Default Branch: master
• Last Pushed: 2023-12-27T23:42:46.000Z (over 2 years ago)
• Last Synced: 2025-10-22T05:56:33.496Z (8 months ago)
• Language: R
• Size: 500 KB
• Stars: 24
• Watchers: 4
• Forks: 6
• Open Issues: 3
• Metadata Files:
  • Readme: README.Rmd
  • License: LICENSE

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README

          
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output:

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# babelwhale: talk to docker and singularity from R

[![R-CMD-check](https://github.com/dynverse/babelwhale/workflows/R-CMD-check/badge.svg)](https://github.com/dynverse/babelwhale/actions)

[![CRAN_Status_Badge](https://www.r-pkg.org/badges/version/babelwhale)](https://cran.r-project.org/package=babelwhale)

[![Codecov test coverage](https://app.codecov.io/gh/dynverse/babelwhale/branch/master/graph/badge.svg)](https://app.codecov.io/gh/dynverse/babelwhale?branch=master)

Specify docker or singularity

```{r}

library(babelwhale)

config <- create_docker_config()

set_default_config(config)

```

Run a command in a container

```{r}

run("alpine", "echo", c("hello"))

```

Get a file from a container

```{r}

read_file("alpine", "/etc/alpine-release")

```

## Latest changes

Check out `news(package = "dynutils")` or [NEWS.md](NEWS.md) for a full list of changes.

```{r news, echo=FALSE, results="asis"}

cat(dynutils::recent_news())

```