https://github.com/dynverse/dyndimred

Dimred methods for TI
https://github.com/dynverse/dyndimred

Last synced: 4 months ago
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Dimred methods for TI

• Host: GitHub
• URL: https://github.com/dynverse/dyndimred
• Owner: dynverse
• License: other
• Created: 2018-05-31T08:30:03.000Z (about 8 years ago)
• Default Branch: master
• Last Pushed: 2021-03-23T08:50:42.000Z (about 5 years ago)
• Last Synced: 2025-12-09T19:35:42.570Z (6 months ago)
• Language: R
• Size: 484 KB
• Stars: 8
• Watchers: 3
• Forks: 2
• Open Issues: 1
• Metadata Files:
  • Readme: README.Rmd
  • License: LICENSE

Awesome Lists containing this project

README

          
---

title: "dyndimred"

output: github_document

---

[![R build status](https://github.com/dynverse/dyndimred/workflows/R-CMD-check/badge.svg)](https://github.com/dynverse/dyndimred/actions)

[![Codecov test coverage](https://codecov.io/gh/dynverse/dyndimred/branch/master/graph/badge.svg)](https://codecov.io/gh/dynverse/dyndimred?branch=master)

  

[**ℹ️ Tutorials**](https://dynverse.org) 

```{r setup, include = FALSE}

knitr::opts_chunk$set(

  collapse = TRUE,

  comment = "#>",

  out.width = "100%",

  fig.path = "man/figures/",

  message = FALSE,

  dpi = 300

)

set.seed(1)

library(tidyverse)

```

# `dyndimred`:  Dimensionality Reduction Methods in a Common Format

Provides a common interface for applying dimensionality reduction methods,

such as PCA, ICA, diffusion maps, LLE, t-SNE, and umap. Just plug in a matrix

and get a dimensionality reduction!

## Latest changes

Check out `news(package = "dyndimred")` or [NEWS.md](NEWS.md) for a full list of changes.

```{r news, echo=FALSE, results="asis"}

cat(dynutils::recent_news())

```

## Dynverse dependencies

![](man/figures/dependencies.png)