https://github.com/dynverse/dynfeature

Extracting relevant features from single-cell trajectories 🎯
https://github.com/dynverse/dynfeature

Last synced: 8 months ago
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Extracting relevant features from single-cell trajectories 🎯

• Host: GitHub
• URL: https://github.com/dynverse/dynfeature
• Owner: dynverse
• License: other
• Created: 2018-04-26T07:27:18.000Z (about 8 years ago)
• Default Branch: master
• Last Pushed: 2023-03-01T21:37:17.000Z (over 3 years ago)
• Last Synced: 2025-10-22T05:59:03.746Z (8 months ago)
• Language: R
• Homepage:
• Size: 473 KB
• Stars: 0
• Watchers: 2
• Forks: 3
• Open Issues: 0
• Metadata Files:
  • Readme: README.Rmd
  • Changelog: NEWS.md
  • License: LICENSE

Awesome Lists containing this project

README

          
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output: github_document

---

```{r setup1, include=FALSE}

knitr::opts_chunk$set(fig.path=".readme_files/", warning=FALSE, message=FALSE, error=FALSE, echo = TRUE)

```

[![R-CMD-check](https://github.com/dynverse/dynfeature/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/dynverse/dynfeature/actions/workflows/R-CMD-check.yaml)

[![Codecov test coverage](https://codecov.io/gh/dynverse/dynfeature/branch/master/graph/badge.svg)](https://app.codecov.io/gh/dynverse/dynfeature?branch=master)

[**Tutorials**](https://dynverse.org)

# Calculating differentially expressed features across a trajectory

Included are methods to

* Calculate the overall feature importance, using `calculate_overall_feature_importance`

* Calculate the importance of a feature at a bifurcation point, using `calculate_milestone_feature_importance`

The plotting of the top features is nicely intergrated into [dynplot](https://github.com/dynverse/dynplot)

[![dynplot heatmap](https://raw.githubusercontent.com/dynverse/dynplot/devel/.readme_files/heatmap-1.png)](https://github.com/dynverse/dynplot)

## Latest changes

Check out `news(package = "dynwrap")` or [NEWS.md](NEWS.md) for a full list of changes.

```{r news, echo=FALSE, results="asis"}

cat(dynutils::recent_news())

```

## Dynverse dependencies

![](man/figures/dependencies.png)