https://github.com/ecell/bioimage_workflows
https://github.com/ecell/bioimage_workflows
Last synced: 8 months ago
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- Host: GitHub
- URL: https://github.com/ecell/bioimage_workflows
- Owner: ecell
- Created: 2020-08-24T08:47:51.000Z (almost 6 years ago)
- Default Branch: master
- Last Pushed: 2023-03-14T03:46:40.000Z (over 3 years ago)
- Last Synced: 2025-10-13T08:16:19.927Z (8 months ago)
- Language: Python
- Size: 3.69 MB
- Stars: 0
- Watchers: 5
- Forks: 2
- Open Issues: 5
-
Metadata Files:
- Readme: README.md
Awesome Lists containing this project
README
# Setup (remotehost)
```
sudo python3 -m pip install mlflow azure-storage-blob
export AZURE_STORAGE_CONNECTION_STRING="XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX"
mlflow server --host 0.0.0.0 --default-artifact-root wasbs://XXXXX@YYYYY.blob.core.windows.net/
```
# Setup (localhost)
```
sudo apt install python3-pip python3-venv
cd ~
python3 -m venv venv-ecell
source venv-ecell/bin/activate
pip install -U pip
pip install mlflow toml scikit-image plotly kaleido azure-storage-blob
pip install git+git://github.com/ecell/scopyon.git@99436fbfd34bb684966846eba75b206c2806f69c
export AZURE_STORAGE_CONNECTION_STRING="XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX"
```
# Running experiment (localhost)
```
git clone https://github.com/ecell/bioimage_workflows
cd bioimage_workflows
git checkout -t origin/nocode
python describe_workflow.py
```