https://github.com/ecell/bioimage_workflows

https://github.com/ecell/bioimage_workflows

Last synced: about 2 months ago
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• Host: GitHub
• URL: https://github.com/ecell/bioimage_workflows
• Owner: ecell
• Created: 2020-08-24T08:47:51.000Z (over 4 years ago)
• Default Branch: master
• Last Pushed: 2023-03-14T03:46:40.000Z (almost 2 years ago)
• Last Synced: 2024-03-26T07:44:15.834Z (9 months ago)
• Language: Python
• Size: 3.69 MB
• Stars: 0
• Watchers: 6
• Forks: 2
• Open Issues: 5
• Metadata Files:
  • Readme: README.md

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README

        
# Setup (remotehost)

```

sudo python3 -m pip install mlflow azure-storage-blob

export AZURE_STORAGE_CONNECTION_STRING="XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX"

mlflow server --host 0.0.0.0 --default-artifact-root wasbs://[email protected]/

```

# Setup (localhost)

```

sudo apt install python3-pip python3-venv

cd ~

python3 -m venv venv-ecell

source venv-ecell/bin/activate

pip install -U pip

pip install mlflow toml scikit-image plotly kaleido azure-storage-blob

pip install git+git://github.com/ecell/scopyon.git@99436fbfd34bb684966846eba75b206c2806f69c

export AZURE_STORAGE_CONNECTION_STRING="XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX"

```

# Running experiment (localhost)

```

git clone https://github.com/ecell/bioimage_workflows

cd bioimage_workflows

git checkout -t origin/nocode

python describe_workflow.py

```