https://github.com/ecell/scopyon

:microscope: Monte Carlo simulation toolkit for bioimaging systems
https://github.com/ecell/scopyon

bioimaging-systems optics python simulation

Last synced: about 2 months ago
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:microscope: Monte Carlo simulation toolkit for bioimaging systems

• Host: GitHub
• URL: https://github.com/ecell/scopyon
• Owner: ecell
• License: bsd-3-clause
• Created: 2014-11-05T06:27:36.000Z (about 10 years ago)
• Default Branch: master
• Last Pushed: 2020-09-04T12:16:12.000Z (over 4 years ago)
• Last Synced: 2024-11-07T06:43:48.514Z (about 2 months ago)
• Topics: bioimaging-systems, optics, python, simulation
• Language: Python
• Homepage:
• Size: 29.9 MB
• Stars: 7
• Watchers: 14
• Forks: 4
• Open Issues: 6
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

        
scopyon

=======

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:microscope: Monte Carlo simulation toolkit for bioimaging systems

Documentation

--------------

See [https://scopyon.readthedocs.io/](https://scopyon.readthedocs.io/) for details.

Requirements

------------

For `scopyon`, Python 3 and its libraries, `numpy`, `scipy`, `matplotlib`, `pyyaml` and `pint`, are required. Installation of `scikit-image`, `pillow` and `plotly` is also recommended.

Installation

------------

```shell-session

$ pip install scopyon

```

or

```shell-session

$ python setup.py test install

```

Quick start

-----------

```shell-session

$ python examples/twocolor.py

```

![TIRF Image](https://github.com/ecell/scopyon/raw/master/examples/twocolor_000.png)

License

-------

`scopyon` is licensed under the terms of BSD-3-Clause (see [LICENSE](/LICENSE)).

Citation

--------

If this package contributes to your work, please cite the followings.

[https://doi.org/10.1371/journal.pone.0130089](https://doi.org/10.1371/journal.pone.0130089)