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https://github.com/ecell/transomics2cytoscape-py
Automation of the transomics 2.5D network visualization
https://github.com/ecell/transomics2cytoscape-py
Last synced: about 2 months ago
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Automation of the transomics 2.5D network visualization
- Host: GitHub
- URL: https://github.com/ecell/transomics2cytoscape-py
- Owner: ecell
- License: mit
- Created: 2022-05-17T04:40:24.000Z (over 2 years ago)
- Default Branch: main
- Last Pushed: 2022-12-26T09:01:10.000Z (almost 2 years ago)
- Last Synced: 2024-03-26T07:44:18.339Z (9 months ago)
- Language: Python
- Size: 333 KB
- Stars: 0
- Watchers: 4
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
- License: LICENSE
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README
# transomics2cytoscape-py
Automation of the transomics 2.5D network visualization
## Install
```
pip install git+https://github.com/ecell/transomics2cytoscape-py
```
## Run
1. Install and launch [Cytoscape](https://cytoscape.org/).
2. Install [KEGGscape App](https://apps.cytoscape.org/apps/keggscape) on [Cytoscape App Manager](http://manual.cytoscape.org/en/stable/App_Manager.html).
3. Run Python interactive shell with `python` command.
4. Run the command in the Python interactive shell.
```
from transomics2cytoscape import transomics2cytoscape as t2c
t2c.create3Dnetwork("https://raw.githubusercontent.com/ecell/transomics2cytoscape/master/inst/extdata/usecase1/yugi2014.tsv")
```