https://github.com/echemdb/manuscript_echemdb_rdm

Supporting information to a manuscript describing echemdb's approach to RDM.
https://github.com/echemdb/manuscript_echemdb_rdm

Last synced: about 2 months ago
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Supporting information to a manuscript describing echemdb's approach to RDM.

• Host: GitHub
• URL: https://github.com/echemdb/manuscript_echemdb_rdm
• Owner: echemdb
• License: other
• Created: 2024-07-04T18:42:14.000Z (6 months ago)
• Default Branch: master
• Last Pushed: 2024-09-13T07:13:22.000Z (4 months ago)
• Last Synced: 2024-09-13T19:53:18.517Z (4 months ago)
• Size: 31.3 KB
• Stars: 0
• Watchers: 2
• Forks: 1
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

        
[![DOI](https://zenodo.org/badge/824276671.svg)](https://zenodo.org/doi/10.5281/zenodo.13739617)

# Welcome to manuscript_echemdb_rdm

This repository contains supporting information for the manuscript denoted [echemdb Toolkit - a Lightweight Approach to Getting Data Ready for Data Management Solutions](https://arxiv.org/abs/2409.07083).

The manuscript illustrates how echemdb's toolbox can be used for local research data management.

It provides information on file naming convention (FNC), automatic/programmatic metadata acquisition, and converting data into [frictionless Data Packages](https://datapackage.org/).

Furthermore, the our [unitpackages](https://echemdb.github.io/unitpackage/) API is introduced (based on the [frictionless Python framework](https://framework.frictionlessdata.io/)), which allows creating, interacting, and exploring these Data Packages.

The examples from the manuscript and the usage of our tools for RDM applications are also illustrated in a [specific documentation](https://echemdb.github.io/rawtofigure/intro.html).

## Structure

The doc folder contains two Jupyter notebooks

* [illustrating automatic annotation of metadata with watchdog](./doc/tag_data.ipynb)

* [providing usage examples for the unitpackage API](./doc/unitpackage_demo.ipynb)

and a folder with

* [data used in the notebooks or shown in the manuscript](./doc/data/)

* [metadata templates for the fileobserver](./doc/files/)

## Installation

The required packages can be found in the [environment.yml], which can be installed manually with pip or conda/mamba

```sh

conda env create -f environment.yml

```