https://github.com/edawson/bio_docker
Dockerfiles for several SV callers and other miscellaneous bio apps.
https://github.com/edawson/bio_docker
Last synced: 3 months ago
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Dockerfiles for several SV callers and other miscellaneous bio apps.
- Host: GitHub
- URL: https://github.com/edawson/bio_docker
- Owner: edawson
- Created: 2015-09-14T20:03:10.000Z (over 9 years ago)
- Default Branch: master
- Last Pushed: 2016-11-01T14:42:26.000Z (over 8 years ago)
- Last Synced: 2025-01-07T20:47:10.510Z (5 months ago)
- Size: 14.6 KB
- Stars: 0
- Watchers: 1
- Forks: 0
- Open Issues: 5
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Metadata Files:
- Readme: README.md
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README
bio\_docker
---------------------------------------
Eric T Dawson
October 2015
## What is it?
The bio\_docker repository contains a number of
directories. Each directory contains a build file for the
relevant bioinformatics tool that is wrapped by the Dockerfile in
that directory.
## Current Status
bio\_docker is under really active development as are the tools underneath,
so expect regular and major changes. Currently, only vg\_d and cortex\_d are
functional build scripts. The rest are simply placeholders.
## Usage
To build any of the images in the repo, simply:
1. Pull the repo
2. ```cd``` to the desired directory
3. Run ```docker build .```
4. Hopefully your image will be built and you can run it using ```docker run ```
Things are still under really active development, so they may not always work so well.
If they don't feel free to issue a pull request or report an issue.
## Considerations
Docker is a pain to run on a managed cluster unless you are really tight with your sysadmins.
Since I'm in between clusters, things are tested to run on Mac OS X, but since the whole point
of Docker is to run on anything HOPEFULLY it will work on your system.
License: MIT