https://github.com/edawson/split-splice-fastq

A bit of python for slicing and splicing FASTA/FASTQ files.
https://github.com/edawson/split-splice-fastq

Last synced: about 2 months ago
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A bit of python for slicing and splicing FASTA/FASTQ files.

• Host: GitHub
• URL: https://github.com/edawson/split-splice-fastq
• Owner: edawson
• Created: 2014-10-03T14:55:15.000Z (over 10 years ago)
• Default Branch: master
• Last Pushed: 2014-10-06T19:47:11.000Z (about 10 years ago)
• Last Synced: 2023-04-04T14:14:23.401Z (almost 2 years ago)
• Language: Python
• Size: 1.96 MB
• Stars: 0
• Watchers: 1
• Forks: 1
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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README

        
# Split-Splice-Fastq

This is a simple python2.7 script for splitting a fasta file into two or more smaller files for processing by BWA. 

## Docker

A dockerfile is included to build this app as an [Agave Science App](https://github.com/waltermoreira/tacc-sci-apps). 

	$ docker build -rm -t split-splice-fastq .

	

You can also download this image from the Docker central repository

	

	$ docker pull agaveapi/split-splice-fastq

## Usage

Usage information is built into all [Agave Science App](https://github.com/waltermoreira/tacc-sci-apps) images. Simply run the container with the `-h` or no arguments.

	$ docker run -it split-splice-fastq -h