https://github.com/edn-es/nf-pgcache

a postgresql cache for Nextflow
https://github.com/edn-es/nf-pgcache

bioinformatics-pipeline groovy nextflow postgresql

Last synced: 2 days ago
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a postgresql cache for Nextflow

• Host: GitHub
• URL: https://github.com/edn-es/nf-pgcache
• Owner: edn-es
• License: mit
• Created: 2024-12-31T10:29:42.000Z (5 days ago)
• Default Branch: main
• Last Pushed: 2025-01-01T10:09:35.000Z (4 days ago)
• Last Synced: 2025-01-01T10:31:23.109Z (4 days ago)
• Topics: bioinformatics-pipeline, groovy, nextflow, postgresql
• Language: Groovy
• Homepage: https://edn-es.github.io/nf-pgcache/
• Size: 1000 Bytes
• Stars: 0
• Watchers: 1
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • Changelog: CHANGELOG.md
  • License: LICENSE

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README

        
# Nextflow PostgreSQL cache

Nextflow's PostgreSQL Cache Plugin enables the storage of task execution metadata in a PostgreSQL database, ensuring data persistence and scalability. This plugin is particularly useful for workflows that require robust, centralized caching mechanisms across distributed environments.

Add the plugin to your `nextflow.config` , configure it to connect with a postgre database and ... this is all.

The plugin will create required tables and will store tasks context when you run your pipeline

Among a way to *Centralized Cache Storage*, using this plugin, you're able to see log executions in real time

## License

This plugin is licensed under the MIT License.

## Contributing

Contributions are welcome! Please submit issues or pull requests to the project's GitHub repository.

## Contact

For commercial support, contact the EDN team at [email protected] or refer to the plugin documentation at

https://edn-es.github.io/ng-pgcache/index.html