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https://github.com/educationaltestingservice/factor_analyzer

A Python module to perform exploratory & confirmatory factor analyses.
https://github.com/educationaltestingservice/factor_analyzer

cfa efa factor-analysis python

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A Python module to perform exploratory & confirmatory factor analyses.

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FactorAnalyzer

--------------



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This is a Python module to perform exploratory and factor analysis (EFA), with several

optional rotations. It also includes a class to perform confirmatory factor

analysis (CFA), with certain pre-defined constraints. In exploratory factor analysis,

factor extraction can be performed using a variety of estimation techniques. The

``factor_analyzer`` package allows users to perform EFA using either (1) a minimum

residual (MINRES) solution, (2) a maximum likelihood (ML) solution, or (3) a principal

factor solution. However, CFA can only be performed using an ML solution.



Both the EFA and CFA classes within this package are fully compatible with `scikit-learn`.

Portions of this code are ported from the excellent R library `psych`, and the `sem`

package provided inspiration for the CFA class.



Please see the `official documentation `__ for additional details.



Description

-----------



Exploratory factor analysis (EFA) is a statistical technique used to

identify latent relationships among sets of observed variables in a

dataset. In particular, EFA seeks to model a large set of observed

variables as linear combinations of some smaller set of unobserved,

latent factors. The matrix of weights, or factor loadings, generated

from an EFA model describes the underlying relationships between each

variable and the latent factors.



Confirmatory factor analysis (CFA), a closely associated technique, is

used to test an a priori hypothesis about latent relationships among sets

of observed variables. In CFA, the researcher specifies the expected pattern

of factor loadings (and possibly other constraints), and fits a model according

to this specification.



Typically, a number of factors (K) in an EFA or CFA model is selected

such that it is substantially smaller than the number of variables. The

factor analysis model can be estimated using a variety of standard

estimation methods, including but not limited MINRES or ML.



Factor loadings are similar to standardized regression coefficients, and

variables with higher loadings on a particular factor can be interpreted

as explaining a larger proportion of the variation in that factor. In the

case of EFA, factor loading matrices are usually rotated after the factor

analysis model is estimated in order to produce a simpler, more interpretable

structure to identify which variables are loading on a particular factor.



Two common types of rotations are:



1. The **varimax** rotation, which rotates the factor loading matrix so

   as to maximize the sum of the variance of squared loadings, while

   preserving the orthogonality of the loading matrix.



2. The **promax** rotation, a method for oblique rotation, which builds

   upon the varimax rotation, but ultimately allows factors to become

   correlated.



This package includes a ``factor_analyzer`` module with a stand-alone

``FactorAnalyzer`` class. The class includes ``fit()`` and ``transform()``

methods that enable users to perform factor analysis and score new data

using the fitted factor model. Users can also perform optional rotations

on a factor loading matrix using the ``Rotator`` class.



The following rotation options are available in both ``FactorAnalyzer``

and ``Rotator``:



    (a) varimax (orthogonal rotation)

    (b) promax (oblique rotation)

    (c) oblimin (oblique rotation)

    (d) oblimax (orthogonal rotation)

    (e) quartimin (oblique rotation)

    (f) quartimax (orthogonal rotation)

    (g) equamax (orthogonal rotation)

    (h) geomin_obl (oblique rotation)

    (i) geomin_ort (orthogonal rotation)



In addition, the package includes a ``confirmatory_factor_analyzer``

module with a stand-alone ``ConfirmatoryFactorAnalyzer`` class. The

class includes ``fit()`` and ``transform()``  that enable users to perform

confirmatory factor analysis and score new data using the fitted model.

Performing CFA requires users to specify in advance a model specification

with the expected factor loading relationships. This can be done using

the ``ModelSpecificationParser`` class.



Note that the ``ConfirmatoryFactorAnalyzer`` class is very experimental at this point,

so use it with caution, especially if your data are highly non-normal.



Examples

--------



Exploratory factor analysis example.



.. code:: python



  In [1]: import pandas as pd

     ...: from factor_analyzer import FactorAnalyzer



  In [2]: df_features = pd.read_csv('tests/data/test02.csv')



  In [3]: fa = FactorAnalyzer(rotation=None)



  In [4]: fa.fit(df_features)

  Out[4]:

  FactorAnalyzer(bounds=(0.005, 1), impute='median', is_corr_matrix=False,

                 method='minres', n_factors=3, rotation=None, rotation_kwargs={},

                 use_smc=True)



  In [5]: fa.loadings_

  Out[5]:

  array([[-0.12991218,  0.16398151,  0.73823491],

         [ 0.03899558,  0.04658425,  0.01150343],

         [ 0.34874135,  0.61452341, -0.07255666],

         [ 0.45318006,  0.7192668 , -0.0754647 ],

         [ 0.36688794,  0.44377343, -0.01737066],

         [ 0.74141382, -0.15008235,  0.29977513],

         [ 0.741675  , -0.16123009, -0.20744497],

         [ 0.82910167, -0.20519428,  0.04930817],

         [ 0.76041819, -0.23768727, -0.12068582],

         [ 0.81533404, -0.12494695,  0.17639684]])



  In [6]: fa.get_communalities()

  Out[6]:

  array([0.5887579 , 0.00382308, 0.50452402, 0.72841182, 0.33184336,

         0.66208429, 0.61911037, 0.73194557, 0.64929612, 0.71149718])



Confirmatory factor analysis example.



.. code:: python



  In [1]: import pandas as pd



  In [2]: from factor_analyzer import (ConfirmatoryFactorAnalyzer,

     ...:                              ModelSpecificationParser)



  In [3]: df_features = pd.read_csv('tests/data/test11.csv')



  In [4]: model_dict = {"F1": ["V1", "V2", "V3", "V4"],

     ...:               "F2": ["V5", "V6", "V7", "V8"]}

  In [5]: model_spec = ModelSpecificationParser.parse_model_specification_from_dict(df_features,

     ...:                                                                           model_dict)



  In [6]: cfa = ConfirmatoryFactorAnalyzer(model_spec, disp=False)



  In [7]: cfa.fit(df_features.values)



  In [8]: cfa.loadings_

  Out[8]:

  array([[0.99131285, 0.        ],

         [0.46074919, 0.        ],

         [0.3502267 , 0.        ],

         [0.58331488, 0.        ],

         [0.        , 0.98621042],

         [0.        , 0.73389239],

         [0.        , 0.37602988],

         [0.        , 0.50049507]])



  In [9]: cfa.factor_varcovs_

  Out[9]:

  array([[1.        , 0.17385704],

         [0.17385704, 1.        ]])



  In [10]: cfa.transform(df_features.values)

  Out[10]:

  array([[-0.46852166, -1.08708035],

         [ 2.59025301,  1.20227783],

         [-0.47215977,  2.65697245],

         ...,

         [-1.5930886 , -0.91804114],

         [ 0.19430887,  0.88174818],

         [-0.27863554, -0.7695101 ]])



Requirements

------------



-  Python 3.8 or higher

-  ``numpy``

-  ``pandas``

-  ``scipy``

-  ``scikit-learn``



Contributing

------------



Contributions to ``factor_analyzer`` are very welcome. Please file an issue

in the repository if you would like to contribute.



You can install the development requirements in a virtual environment with:



.. code-block:: bash



   python -m pip install -e .[dev]

   pre-commit install



Installation

------------



You can install this package via ``pip`` with:



``$ pip install factor_analyzer``



Alternatively, you can install via ``conda`` with:



``$ conda install -c ets factor_analyzer``



License

-------



GNU General Public License (>= 2)