https://github.com/eggzilla/genbank

Genbank format tools and parser
https://github.com/eggzilla/genbank

Last synced: 2 months ago
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Genbank format tools and parser

• Host: GitHub
• URL: https://github.com/eggzilla/genbank
• Owner: eggzilla
• License: gpl-3.0
• Created: 2014-05-12T15:11:12.000Z (over 10 years ago)
• Default Branch: master
• Last Pushed: 2021-09-24T06:53:59.000Z (over 3 years ago)
• Last Synced: 2023-08-02T23:14:37.233Z (over 1 year ago)
• Language: Haskell
• Homepage:
• Size: 119 KB
• Stars: 10
• Watchers: 4
• Forks: 2
• Open Issues: 2
• Metadata Files:
  • Readme: README.md
  • Changelog: ChangeLog.md
  • License: LICENSE

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README

        
# Genbank   

[![Hackage](https://img.shields.io/hackage/v/Genbank.svg)](https://hackage.haskell.org/package/Genbank) [![Build Status](https://travis-ci.org/eggzilla/Genbank.svg?branch=master)](https://travis-ci.org/eggzilla/Genbank)

=========

Haskell cabal Genbank libary contains tools, parser and datastructures for the NCBI (National Center for Biotechnology Information) Genbank format.

For more information on genbank refer to: 

http://www.ncbi.nlm.nih.gov/genbank/

For a sample genbank record see: 

http://www.ncbi.nlm.nih.gov/Sitemap/samplerecord.html

###Datastructures for Genbank format (GenbankData.hs)

Contains Haskell datastructures for Genbank format and for contained features, subfeatures

###Parse Genbank format (GenbankParser.hs)

Contains Haskell functions to parse Genbank format from files or internal Strings.

###Tools for processing Genbank  (GenbankTools)

Contains Haskell functions to extract nucleotide sequences for features