https://github.com/eggzilla/taxonomy

Haskell cabal Taxonomy libary contains tools, parsers, datastructures and visualisation for the NCBI (National Center for Biotechnology Information) Taxonomy datasources.
https://github.com/eggzilla/taxonomy

bioinformatics datastructures haskell taxonomy visualisation

Last synced: 10 months ago
JSON representation

Haskell cabal Taxonomy libary contains tools, parsers, datastructures and visualisation for the NCBI (National Center for Biotechnology Information) Taxonomy datasources.

• Host: GitHub
• URL: https://github.com/eggzilla/taxonomy
• Owner: eggzilla
• License: gpl-3.0
• Created: 2013-12-12T09:45:14.000Z (about 12 years ago)
• Default Branch: master
• Last Pushed: 2021-05-30T14:14:40.000Z (over 4 years ago)
• Last Synced: 2025-02-13T20:44:34.344Z (12 months ago)
• Topics: bioinformatics, datastructures, haskell, taxonomy, visualisation
• Language: Haskell
• Homepage:
• Size: 92.8 KB
• Stars: 2
• Watchers: 5
• Forks: 0
• Open Issues: 1
• Metadata Files:
  • Readme: README.md
  • Changelog: ChangeLog.md
  • License: LICENSE

Awesome Lists containing this project

README

          
Taxonomy [![Hackage](https://img.shields.io/hackage/v/Taxonomy.svg)](https://hackage.haskell.org/package/Taxonomy) [![Build Status](https://travis-ci.org/eggzilla/Taxonomy.svg?branch=master)](https://travis-ci.org/eggzilla/Taxonomy)

=============

Haskell cabal Taxonomy libary contains tools, parsers, datastructures and visualisation

for the NCBI (National Center for Biotechnology Information) Taxonomy datasources.

It can utilize information from the Entrez REST interface (via [EntrezHTTP](https://github.com/eggzilla/EntrezHTTP),

as well as from the files of the Taxonomy database dump.

Input data is parsed into a FGL based datastructure, which enables a wealth of processing

steps like node distances, retrieval of parent nodes or extraction of

subtrees.

Trees can be visualised via dot-format (graphviz) or

via json-format (d3js).