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https://github.com/egnha/valaddin

Functional input validation to make R functions more readable and robust
https://github.com/egnha/valaddin

data-validation input-validation r type-safety

Last synced: 3 months ago
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Functional input validation to make R functions more readable and robust

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README 

        
---

output: github_document

---



```{r, echo = FALSE}

knitr::opts_chunk$set(

  collapse = TRUE,

  comment  = "#>",

  fig.path = "README-"

)

```



**Development has moved to [rong](https://github.com/egnha/rong)**



# valaddin



[![R-CMD-check](https://github.com/egnha/valaddin/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/egnha/valaddin/actions/workflows/R-CMD-check.yaml) [![CRAN_Status_Badge](https://www.r-pkg.org/badges/version/valaddin)](https://cran.r-project.org/package=valaddin) [![stability-frozen](https://img.shields.io/badge/stability-frozen-blue.svg)](https://github.com/emersion/stability-badges#frozen)



Dealing with invalid function inputs is a chronic pain for R users, given R's weakly typed nature. *valaddin* provides pain relief---a lightweight R package that enables you to transform an existing function into a function with input validation checks, *in situ*, in a manner suitable for both programmatic use and interactive sessions.



## Installation



Install from [CRAN](https://cran.r-project.org/package=valaddin)



```{r, eval = FALSE}

install.packages("valaddin")

```



or get the development version from GitHub using the [devtools](https://github.com/r-lib/devtools) package



```{r, eval = FALSE}

# install.packages("devtools")

devtools::install_github("egnha/valaddin", ref = "dev", build_vignettes = TRUE)

```



## Why use valaddin



### Fail fast---save time, spare confusion



You can be more confident your function works correctly, when you know its arguments are well-behaved. But when they aren't, its better to stop immediately and bring them into line, than to let them pass and wreak havoc, exposing yourself to breakages or, worse, silently incorrect results. Validating the inputs of your functions is good defensive programming practice.



Suppose you have a function `secant()`



```{r}

secant <- function(f, x, dx) (f(x + dx) - f(x)) / dx

```



and you want to ensure that the user (or some code) supplies numerical inputs for `x` and `dx`. Typically, you'd rewrite `secant()` so that it stops if this condition is violated:



```{r, error = TRUE, purl = FALSE}

secant_numeric <- function(f, x, dx) {

  stopifnot(is.numeric(x), is.numeric(dx))

  secant(f, x, dx)

}



secant_numeric(log, 1, .1)



secant_numeric(log, "1", ".1")

```



### The standard approach in R is problematic



While this works, it's not ideal, even in this simple situation, because



-   it's inconvenient for interactive use at the console: you have to declare a new function, and give it a new name (or copy-paste the original function body)



-   it doesn't catch all errors, only the first that occurs among the checks



-   you're back to square one, if you later realize you need additional checks, or want to skip them altogether.



### valaddin rectifies these shortcomings



valaddin provides a function `firmly()` that takes care of input validation by *transforming* the existing function, instead of forcing you to write a new one. It also helps you by reporting *every* failing check.



```{r, error = TRUE, purl = FALSE}

library(valaddin)



# Check that `x` and `dx` are numeric

secant <- firmly(secant, list(~x, ~dx) ~ is.numeric)



secant(log, 1, .1)



secant(log, "1", ".1")

```



To add additional checks, just apply the same procedure again:



```{r, error = TRUE, purl = FALSE}

secant <- firmly(secant, list(~x, ~dx) ~ {length(.) == 1L})



secant(log, "1", c(.1, .01))

```



Or, alternatively, all in one go:



```{r, error = TRUE, purl = FALSE}

secant <- loosely(secant)  # Retrieves the original function

secant <- firmly(secant, list(~x, ~dx) ~ {is.numeric(.) && length(.) == 1L})



secant(log, 1, .1)



secant(log, "1", c(.1, .01))

```



### Check anything using a simple, consistent syntax



`firmly()` uses a simple formula syntax to specify arbitrary checks---not just type checks. Every check is a formula of the form ` ~ `. The "what" part on the right is a *function* that does a check, while the (form of the) "where" part on the left indicates where to apply the check---at which *arguments* or *expressions* thereof.



valaddin provides a number of conveniences to make checks for `firmly()` informative and easy to specify.



#### Use custom error messages



Use a custom error message to clarify the *purpose* of a check:



```{r, error = TRUE, purl = FALSE}

bc <- function(x, y) c(x, y, 1 - x - y)



# Check that `y` is positive

bc_uhp <- firmly(bc, list("(x, y) not in upper half-plane" ~ y) ~ {. > 0})



bc_uhp(.5, .2)



bc_uhp(.5, -.2)

```



#### Easily apply a check to all arguments



Leave the left-hand side of a check formula blank to apply it to all arguments:



```{r, error = TRUE, purl = FALSE}

bc_num <- firmly(bc, ~is.numeric)



bc_num(.5, ".2")



bc_num(".5", ".2")

```



Or fill in a custom error message:



```{r, error = TRUE, purl = FALSE}

bc_num <- firmly(bc, "Not numeric" ~ is.numeric)



bc_num(.5, ".2")

```



#### Check conditions with multi-argument dependencies



Use the `isTRUE()` predicate to implement checks depending on multiple arguments or, equivalently, the check maker `vld_true()`:



```{r, error = TRUE, purl = FALSE}

in_triangle <- function(x, y) {x >= 0 && y >= 0 && 1 - x - y >= 0}

outside <- "(x, y) not in triangle"



bc_tri <- firmly(bc, list(outside ~ in_triangle(x, y)) ~ isTRUE)



# Or more concisely:

bc_tri <- firmly(bc, vld_true(outside ~ in_triangle(x, y)))



# Or more concisely still, by relying on an auto-generated error message:

# bc_tri <- firmly(bc, vld_true(~in_triangle(x, y)))



bc_tri(.5, .2)



bc_tri(.5, .6)

```



### Make your code more intelligible



To make your functions more intelligible, declare your input assumptions and move the core logic to the fore. You can do this using `firmly()`, in several ways:



-   Precede the function header with input checks, by explicitly assigning the function to `firmly()`'s `.f` argument:



    ```{r, error = TRUE, purl = FALSE}

    bc <- firmly(

      ~is.numeric,

      ~{length(.) == 1L},

      vld_true(outside ~ in_triangle(x, y)),

      .f = function(x, y) {

        c(x, y, 1 - x - y)

      }

    )



    bc(.5, .2)



    bc(.5, c(.2, .1))



    bc(".5", 1)

    ```



-   Use the [magrittr](https://github.com/tidyverse/magrittr) `%>%` operator to deliver input checks, by capturing them as a list with `firmly()`'s `.checklist` argument:



    ```{r, message = FALSE}

    library(magrittr)



    bc2 <- list(

      ~is.numeric,

      ~{length(.) == 1L},

      vld_true(outside ~ in_triangle(x, y))

    ) %>%

      firmly(function(x, y) {

        c(x, y, 1 - x - y)

      },

      .checklist = .)

    ```



-   Better yet, use the `%checkin%` operator:



    ```{r}

    bc3 <- list(

      ~is.numeric,

      ~{length(.) == 1L},

      vld_true(outside ~ in_triangle(x, y))

    ) %checkin%

      function(x, y) {

        c(x, y, 1 - x - y)

      }

    ```



### Learn more



See the package documentation `?firmly`, `help(p = valaddin)` for detailed information about `firmly()` and its companion functions, and the [vignette](https://cran.r-project.org/package=valaddin/vignettes/valaddin.html) for an overview of use cases.



## Related packages



-   [assertive](https://bitbucket.org/richierocks/assertive), [assertthat](https://github.com/hadley/assertthat), and [checkmate](https://github.com/mllg/checkmate) provide handy collections of predicate functions that you can use in conjunction with `firmly()`.



-   [argufy](https://github.com/gaborcsardi/argufy) takes a different approach to input validation, using [roxygen](https://github.com/r-lib/roxygen2) comments to specify checks.



-   [ensurer](https://github.com/smbache/ensurer) and [assertr](https://github.com/ropensci/assertr) provide a means of validating function values. Additionally, ensurer provides an experimental replacement for `function()` that builds functions with type-validated arguments.



-   [typeCheck](https://github.com/jimhester/typeCheck), together with [Types for R](https://github.com/jimhester/types), enables the creation of functions with type-validated arguments by means of special type annotations. This approach is orthogonal to that of valaddin: whereas valaddin specifies input checks as *predicate functions with scope*, typeCheck specifies input checks as *arguments with type*.



## License



MIT Copyright © 2016--2023 [Eugene Ha](https://github.com/egnha)