https://github.com/elixir-cloud-aai/crategen
Compile GA4GH WES and TES requests from Workflow Run RO-Crates and package WES and TES runs as Workflow Run RO-Crates
https://github.com/elixir-cloud-aai/crategen
Last synced: 3 months ago
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Compile GA4GH WES and TES requests from Workflow Run RO-Crates and package WES and TES runs as Workflow Run RO-Crates
- Host: GitHub
- URL: https://github.com/elixir-cloud-aai/crategen
- Owner: elixir-cloud-aai
- License: apache-2.0
- Created: 2024-05-07T08:40:24.000Z (about 2 years ago)
- Default Branch: main
- Last Pushed: 2025-03-07T15:34:13.000Z (about 1 year ago)
- Last Synced: 2025-10-26T04:42:55.236Z (7 months ago)
- Language: Python
- Size: 120 KB
- Stars: 1
- Watchers: 24
- Forks: 2
- Open Issues: 8
-
Metadata Files:
- Readme: README.md
- License: LICENSE
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README
# CrateGen
[](./LICENSE)
[](https://www.python.org/downloads/release/python-311/)
## Synopsis
This project aims to create a library that translates between GA4GH Cloud API schemas and RO-Crate profiles to facilitate reproducibility in scientific research. The tool will enable the packaging and sharing of task/tool and workflow runs, allowing other researchers to reproduce them or use parts of them.
## Description
The CrateGen Tool is designed to compile RO-Crates from tool and workflow executions in GA4GH Cloud API-powered cloud infrastructures. This will allow easy re-execution of these computational analyses, thus improving the reporting and reproducibility of computational research. Additionally, it will allow the creation of WES/TES calls from existing WRROCs, enabling a dual functionality.
## Installation
To install the necessary dependencies, run the following command:
```bash
pip install -r requirements.txt
```
## Contributing
We welcome contributions from the community. Please fork the repository and create a pull request for any changes. Make sure to follow the coding standards and include tests for any new functionality.
## Code of Conduct
## Versioning
## License
This project is distributed under the [Apache License 2.0](https://img.shields.io/badge/License-Apache_2.0-blue.svg), a
copy of which is also available in [`LICENSE`][license].
## Contact
The project is maintained by [ELIXIR Cloud & AAI][elixir-cloud-aai].
- For filing bug reports, feature requests or other code-related issues, please
make use of the project's [issue tracker](https://github.com/elixir-cloud-aai/wrroc-ga4gh-cloud-converter/issues).
[badge-url-license]:
[elixir-cloud-aai]: https://elixir-cloud.dcc.sib.swiss/
[license]: LICENSE