https://github.com/elliohow/fMRI_ROI_Analysis_Tool
An analysis tool that uses per-voxel statistical maps in conjunction with FSL atlases to create per-region statistical maps. Current usage includes the creation of regional maps of temporal signal to noise ratio.
https://github.com/elliohow/fMRI_ROI_Analysis_Tool
brain-imaging fmri fmri-preprocessing fmri-roi-analysis neuroimaging python
Last synced: about 1 year ago
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An analysis tool that uses per-voxel statistical maps in conjunction with FSL atlases to create per-region statistical maps. Current usage includes the creation of regional maps of temporal signal to noise ratio.
- Host: GitHub
- URL: https://github.com/elliohow/fMRI_ROI_Analysis_Tool
- Owner: elliohow
- License: apache-2.0
- Created: 2020-03-11T13:23:59.000Z (over 6 years ago)
- Default Branch: master
- Last Pushed: 2024-05-02T14:16:28.000Z (about 2 years ago)
- Last Synced: 2025-04-22T08:06:15.554Z (about 1 year ago)
- Topics: brain-imaging, fmri, fmri-preprocessing, fmri-roi-analysis, neuroimaging, python
- Language: Python
- Homepage:
- Size: 327 MB
- Stars: 13
- Watchers: 1
- Forks: 4
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
- Contributing: CONTRIBUTING.md
- License: LICENSE
- Code of conduct: CODE_OF_CONDUCT.md
- Citation: CITATION.cff
Awesome Lists containing this project
README
# fRAT - fMRI ROI Analysis Tool
[](https://joss.theoj.org/papers/cc9c0cb3b12abaf30c8381728d3229d7)
[](http://makeapullrequest.com)
[](https://github.com/elliohow/fMRI_ROI_Analysis_Tool/blob/master/LICENSE)
[](https://github.com/elliohow/fmri_roi_analysis_tool/releases/latest)
[](https://github.com/elliohow/fmri_roi_analysis_tool/issues)
[](https://fmri-roi-analysis-tool.readthedocs.io/en/latest/)
fRAT is an open-source python-based GUI application used to simplify the processing and analysis of fMRI data by
converting voxelwise maps into ROI-wise maps. An installation of FSL is required in order to use fRAT.
> fRAT is written using **Python** for **MacOS, Linux and WSL2**.
Documentation:
[Home page](https://fmri-roi-analysis-tool.readthedocs.io)
[Installation instructions](https://fmri-roi-analysis-tool.readthedocs.io/en/latest/installation.html)
[ROI analysis tutorial](https://fmri-roi-analysis-tool.readthedocs.io/en/latest/tutorials/Basic-ROI-analysis.html)
## Citation
**When using fRAT, please include the following citation:**
Howley, E., Francis, S., & Schluppeck, D. (2023). fRAT: an interactive, Python-based tool for region-of-interest summaries of functional imaging data. Journal of Open Source Software, 8(85), 5200. https://doi.org/10.21105/joss.05200
## Reporting bugs
To report a bug or suggest a new feature, please go to [fRAT's Issues](https://github.com/elliohow/fMRI_ROI_Analysis_Tool/issues/new/choose).
For other questions, issues or discussion please go to [fRAT's Discussions](https://github.com/elliohow/fMRI_ROI_Analysis_Tool/discussions).
## Contributing to the project
If you'd like to contribute to the project please read our [contributing guidelines](https://github.com/elliohow/fMRI_ROI_Analysis_Tool/blob/master/CONTRIBUTING.md). Please also read through our [code of conduct](https://github.com/elliohow/fMRI_ROI_Analysis_Tool/blob/master/CODE_OF_CONDUCT.md).
## Versioning
We use [Semantic versioning](http://semver.org/) for versioning. For the versions available, see the
[tag list](https://github.com/elliohow/fMRI_ROI_Analysis_Tool/tags) for this project.
## Licensing
This project uses the Apache 2.0 license. For the text version of the license see
[here](https://github.com/elliohow/fMRI_ROI_Analysis_Tool/blob/master/LICENSE).
Prior to version 1.0.0, this project used an MIT license.
## Images
