https://github.com/elliothershberg/interactive-mutation-browser
In silico protein surgery using ESM.
https://github.com/elliothershberg/interactive-mutation-browser
protein-language-model protein-structure
Last synced: about 1 month ago
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In silico protein surgery using ESM.
- Host: GitHub
- URL: https://github.com/elliothershberg/interactive-mutation-browser
- Owner: elliothershberg
- Created: 2023-02-13T21:51:12.000Z (over 2 years ago)
- Default Branch: main
- Last Pushed: 2024-03-12T18:03:16.000Z (over 1 year ago)
- Last Synced: 2025-05-07T14:02:32.140Z (about 1 month ago)
- Topics: protein-language-model, protein-structure
- Language: TypeScript
- Homepage: https://mutationbrowser.com/
- Size: 309 KB
- Stars: 18
- Watchers: 2
- Forks: 1
- Open Issues: 1
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Metadata Files:
- Readme: README.md
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README
# Interactive Mutation Browser
## About
Protein Language Models (PLMs) are emerging as a category of [Foundation Model](https://en.wikipedia.org/wiki/Foundation_models) in the life sciences.
While there has been a lot of creative exploration of new ways to interaction with Large Language Models (LLMs), the application space of PLMs remains underexplored.
This project is an effort to research a new type of PLM interaction: **interactive mutation browsing**.
You can read more about the idea behind this tool and how it works [here](https://centuryofbio.substack.com/p/interactive-mutation-browser).
## Tech stack
- UI
- [Typescript](https://www.typescriptlang.org/)
- [NextJS](https://nextjs.org/)
- [Tailwind](https://tailwindcss.com/)
- Visualization
- [visx](https://airbnb.io/visx/)
- [3Dmol.js](http://3dmol.org/)
- API
- [ESM Atlas](https://esmatlas.com/)
- Infrastructure/Deployment
- [Vercel](https://vercel.com/)