https://github.com/emilydolson/chemical-ecology
https://github.com/emilydolson/chemical-ecology
Last synced: 9 months ago
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- Host: GitHub
- URL: https://github.com/emilydolson/chemical-ecology
- Owner: emilydolson
- License: mit
- Created: 2021-10-18T16:47:27.000Z (about 4 years ago)
- Default Branch: main
- Last Pushed: 2024-11-25T23:22:39.000Z (12 months ago)
- Last Synced: 2024-11-26T00:25:28.661Z (12 months ago)
- Language: C++
- Size: 13.9 MB
- Stars: 1
- Watchers: 2
- Forks: 3
- Open Issues: 1
-
Metadata Files:
- Readme: README.md
- Contributing: CONTRIBUTING.md
- License: LICENSE
- Code of conduct: CODE_OF_CONDUCT.md
- Authors: AUTHORS.md
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README
# The Ecology–Evolution Continuum and the Origin of Life
A simple model of the early interactions of pre-biotic chemicals. In active development.
Check out the live in-browser web app of an early version of this project at [https://emilydolson.github.io/chemical-ecology/web/chemical-ecology.html][].
- Free software: MIT license
## Install
`git clone --recursive git@github.com:emilydolson/chemical-ecology.git`
## Run
- Compile: `make`
- Run: `./chemical-ecology`
- View results in output/
## As Seen In
- Foreback, M., Leither, S., & Dolson, E. (2023, July). [Using evolutionary computation to find parameters that promote egalitarian major evolutionary transitions](https://dl.acm.org/doi/pdf/10.1145/3583133.3590704). In _Proceedings of the Companion Conference on Genetic and Evolutionary Computation_ (pp. 135-138).
- Foreback, M., Leither, S., Baum, D. A., & Dolson, E. (2023, July). [The role of abiotic parameters in the promotion of egalitarian major evolutionary transitions](https://direct.mit.edu/isal/proceedings-abstract/isal/35/116809). In _ALIFE 2023: Ghost in the Machine: Proceedings of the 2023 Artificial Life Conference_. MIT Press.
- Leither, S., Foreback, M., Baum, D. A., & Dolson, E. (2023, July). [Interaction strengths affect whether ecological networks promote the initiation of egalitarian major transitions](https://direct.mit.edu/isal/proceedings/isal2023/35/73/116913). In _ALIFE 2023: Ghost in the Machine: Proceedings of the 2023 Artificial Life Conference_. MIT Press.
- J. Shea, S. Leither, M. Foreback, E. Dolson, and A. Lalejini, “[Environmental connectivity influences the origination of adaptive processes](https://ecoevorxiv.org/repository/view/6994/),” in ALIFE 2024: Proceedings of the 2023 Artificial Life Conference, MIT Press, 2024
## Credits
This package was created with [Cookiecutter][] and the [devosoft/cookiecutter-empirical-project][] project template.
This package uses [Empirical](https://github.com/devosoft/Empirical#readme), a library of tools for scientific software development, with emphasis on also being able to build web interfaces using Emscripten.
## Dependencies
To install [Empirical](https://github.com/devosoft/Empirical), pull down a clone of the Empirical repository. See [Quick Start Guides](https://empirical.readthedocs.io/en/latest/QuickStartGuides) for directions on cloning and using the library.
[https://emilydolson.github.io/chemical-ecology]:
https://emilydolson.github.io/chemical-ecology
[Cookiecutter]: https://github.com/audreyr/cookiecutter
[devosoft/cookiecutter-empirical-project]: https://github.com/devosoft/cookiecutter-empirical-project