https://github.com/emitanaka/dgest

Digest of Genotype by Environmental (GxE) Data
https://github.com/emitanaka/dgest

Last synced: about 1 month ago
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Digest of Genotype by Environmental (GxE) Data

• Host: GitHub
• URL: https://github.com/emitanaka/dgest
• Owner: emitanaka
• License: other
• Created: 2024-02-06T05:58:57.000Z (over 1 year ago)
• Default Branch: master
• Last Pushed: 2024-02-14T04:36:26.000Z (over 1 year ago)
• Last Synced: 2025-04-02T02:35:46.680Z (about 2 months ago)
• Language: R
• Size: 12.7 KB
• Stars: 1
• Watchers: 1
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

        


# dgest

[![Lifecycle:

experimental](https://img.shields.io/badge/lifecycle-experimental-orange.svg)](https://lifecycle.r-lib.org/articles/stages.html#experimental)

The `dgest` R package is a collection of functions to provide digestible

summaries of genotype-by-environment (GxE) data. It serves to provide

common summaries for initial data analysis.

``` r

library(dgest)

toydata

#>   gen  env rep

#> 1   A env2   1

#> 2   A env3   1

#> 3   A env1   1

#> 4   B env1   1

#> 5   A env2   2

#> 6   B env3   2

#> 7   B env1   2

#> 8   C env2   2

#> 9   C env1   1

C <- concurrence(toydata, gen, env)

C

#>       env

#> env    env1 env2 env3

#>   env1    3    2    2

#>   env2    2    2    1

#>   env3    2    1    2

adorn_common_percentages(C)

#>    env       env1      env2      env3

#> 1 env1          3 2 (66.7%) 2 (66.7%)

#> 2 env2 2 (100.0%)         2 1 (50.0%)

#> 3 env3 2 (100.0%) 1 (50.0%)         2

```