https://github.com/epfl-center-for-imaging/napari-adaptive-painting

Propagate label annotations in Napari.
https://github.com/epfl-center-for-imaging/napari-adaptive-painting

image-annotation-tool napari-plugin

Last synced: 27 days ago
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Propagate label annotations in Napari.

• Host: GitHub
• URL: https://github.com/epfl-center-for-imaging/napari-adaptive-painting
• Owner: EPFL-Center-for-Imaging
• License: bsd-3-clause
• Created: 2024-08-13T12:09:38.000Z (9 months ago)
• Default Branch: main
• Last Pushed: 2025-01-24T08:59:30.000Z (3 months ago)
• Last Synced: 2025-01-24T09:29:55.554Z (3 months ago)
• Topics: image-annotation-tool, napari-plugin
• Language: Python
• Homepage:
• Size: 20.5 MB
• Stars: 0
• Watchers: 2
• Forks: 1
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

        
![EPFL Center for Imaging logo](https://imaging.epfl.ch/resources/logo-for-gitlab.svg)

# 🖌️ napari-adaptive-painting

Propagate label annotations in Napari.



    



## Installation

You can install `napari-adaptive-painting` via [pip](https://pypi.org/project/pip/):

    pip install napari-adaptive-painting

## Usage

- Select the plugin from the `Plugins` menu of Napari.

- Open an image to annotate (2D+t or 3D).

- Open, load, or create a `Labels` layer for annotating objects.

- Select the instance label to adaptively paint from the layer controls (tip: use the `Pick mode` to quickly select labels) or draw a new one (in the visible 2D plane).

- Click on *Start*.

- Move along the Z axis (which can also represent time). Whenever the Z plane changes, the label mask is adapted to match the new Z plane.

**Known limitations**

- The plugin won't work if the layers are transposed. Stick to the original layer orientation.

## Contributing

Contributions are welcome. Please get in touch if you'd like to be involved in improving or extending the package.

## License

Distributed under the terms of the [BSD-3](http://opensource.org/licenses/BSD-3-Clause) license, "napari-adaptive-painting" is free and open source software.

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This [napari](https://github.com/napari/napari) plugin is an output of a collaborative project between the [EPFL Center for Imaging](https://imaging.epfl.ch/) and the [De Palma Lab](https://www.epfl.ch/labs/depalma-lab/) in 2024.