https://github.com/epfl-center-for-imaging/napari-ortho-plotter

Interactively plot the image intensity along the depth axis of a 3D image dataset.
https://github.com/epfl-center-for-imaging/napari-ortho-plotter

napari-plugin

Last synced: 3 months ago
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Interactively plot the image intensity along the depth axis of a 3D image dataset.

• Host: GitHub
• URL: https://github.com/epfl-center-for-imaging/napari-ortho-plotter
• Owner: EPFL-Center-for-Imaging
• License: bsd-3-clause
• Created: 2023-10-19T20:07:20.000Z (almost 3 years ago)
• Default Branch: main
• Last Pushed: 2025-12-08T14:32:16.000Z (8 months ago)
• Last Synced: 2026-04-21T16:20:51.787Z (3 months ago)
• Topics: napari-plugin
• Language: Python
• Homepage:
• Size: 2.61 MB
• Stars: 1
• Watchers: 1
• Forks: 1
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

          
![EPFL Center for Imaging logo](https://imaging.epfl.ch/resources/logo-for-gitlab.svg)

# Interactive orthogonal profile plots in Napari

[demo.webm](https://github.com/user-attachments/assets/dd565cd5-8742-4905-bf47-8f128c7d6f77)

In 2D view, hover over a location in the image to plot the intensity profile along the orthogonal (Z, or channel) axis at that location.

This project is part of an ongoing collaboration between the [EPFL Center for Imaging](https://imaging.epfl.ch/) and the [Bionanophotonic Systems Laboratory](https://www.epfl.ch/labs/bios/).

**Authors**

- Mallory Wittwer (EPFL Center for Imaging)

- Felix Richter (BIOS)

## Installation

You can install `napari-z-plotter` via [pip]:

    pip install napari-z-plotter

## Usage

Select the plugin from the `Plugins` menu of Napari.

## Contributing

Contributions are very welcome. Please get in touch if you'd like to be involved in improving or extending the package.

## License

This software is distributed under the terms of the [BSD-3](http://opensource.org/licenses/BSD-3-Clause) license.

## Issues

If you encounter any problems, please file an issue along with a detailed description.