https://github.com/estrellaxd/pyrawtools
A python library for Linux/macOS to read Thermo RAW file.
https://github.com/estrellaxd/pyrawtools
Last synced: about 1 month ago
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A python library for Linux/macOS to read Thermo RAW file.
- Host: GitHub
- URL: https://github.com/estrellaxd/pyrawtools
- Owner: EstrellaXD
- License: mit
- Created: 2022-11-11T02:43:22.000Z (over 2 years ago)
- Default Branch: main
- Last Pushed: 2023-03-30T03:13:40.000Z (about 2 years ago)
- Last Synced: 2025-03-22T15:23:24.337Z (about 2 months ago)
- Language: Python
- Homepage:
- Size: 1.71 MB
- Stars: 3
- Watchers: 2
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
- License: LICENSE
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README
# pyRawTools
pyRawTools is a Python package for Windows/Linux/Mac processing raw data from mass spectrometry experiments. Base on RawTools and UNIX command line.
# Install
1. Must install mono
1. For macOS, use brew to install mono
```zsh
brew install mono
```
2. For Linux, use apt or yum to install mono
```bash
sudo apt install mono-complete
```
2. Install or Build
1. Install
2. ```bash
pip install pyRawTools
```
2. Build
1. Clone this repository
```bash
git clone https://github.com/EstrellaXD/pyRawTools.git
```
2. Install python package
```bash
cd pyRawTools
python setup.py install
```
# Usage
1. Convert raw file to pandas DataFrame
```python
from pyRawTools import MSLoader
loader = MSLoader()
raw_data, raw_metrix = loader.load('path/to/raw/file.RAW')
```