https://github.com/etowahadams/autogosling-aws-lambda

https://github.com/etowahadams/autogosling-aws-lambda

Last synced: about 2 months ago
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• Host: GitHub
• URL: https://github.com/etowahadams/autogosling-aws-lambda
• Owner: etowahadams
• Created: 2024-02-21T18:05:19.000Z (11 months ago)
• Default Branch: main
• Last Pushed: 2024-03-04T21:16:45.000Z (10 months ago)
• Last Synced: 2024-10-18T17:27:16.059Z (3 months ago)
• Language: Python
• Size: 477 KB
• Stars: 1
• Watchers: 1
• Forks: 0
• Open Issues: 1
• Metadata Files:
  • Readme: README.md

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README

        
# AutoGosling in AWS Lambda

This is an AWS Lambda function which takes an image of a genomics visualization and returns a [Gosling specification](http://gosling-lang.org/docs/reference) 

which approximates the input visualization. Most of the code was copied and adapted from [AutoGosling](https://github.com/autogosling/autogosling-tool).

`app.py` is the entry point for the lambda function.

## Local development

### Setup

Tested using Python 3.9. 

```bash

git clone https://github.com/etowahadams/autogosling-aws-lambda.git

cd autogosling-aws-lambda

## Create a virtual environment

python -m venv env

source env/bin/activate

pip install -r requirements.txt

## Download the ONNX model

wget -O best.onnx https://drive.google.com/file/d/1x_e4V9LDgjsZhMWCnONbiQXK4Zfw6t27/view?usp=share_link

```

### Test usage

This will return the predicted Gosling specification 

```bash

python3 main.py glyph.png

```