https://github.com/etowahadams/interprot

https://github.com/etowahadams/interprot

Last synced: 4 days ago
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• Host: GitHub
• URL: https://github.com/etowahadams/interprot
• Owner: etowahadams
• Created: 2024-08-30T22:01:08.000Z (5 months ago)
• Default Branch: main
• Last Pushed: 2025-01-14T06:20:10.000Z (6 days ago)
• Last Synced: 2025-01-14T06:34:23.803Z (6 days ago)
• Language: TypeScript
• Homepage: https://interprot.com/
• Size: 3.19 MB
• Stars: 69
• Watchers: 2
• Forks: 6
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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README

        
# InterProt

This repo contains tools used to interpret protein language models. `viz` contains the frontend app for visualizing SAE features. `interprot` is a python package containing tools for SAE training and interpretation.

## The visualizer

```bash

cd viz

pnpm install

pnpm run dev

```

## The python package

### Set up Docker container and run tests

```bash

docker compose build

docker compose run --rm interprot bash

pytest

```

### Running commands

Each directory under `interprot` contains a command-line tool. For example, `make_viz_files` takes in an SAE checkpoint and generates JSON files containing SAE activations used to serve the visualizer. You can run it with

```bash

cd interprot

python -m make_viz_files \

    --checkpoint-files  \

    --output-dir 

```

Or you can install this repo as a package and run it from any directory:

```bash

RUN pip install -e .

make_viz_files --checkpoint-files  --output-dir 

```