https://github.com/euphrasiologist/cross_ploidy

A review on the emerging importance of cross-ploidy hybridisation and introgression
https://github.com/euphrasiologist/cross_ploidy

Last synced: 12 days ago
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A review on the emerging importance of cross-ploidy hybridisation and introgression

• Host: GitHub
• URL: https://github.com/euphrasiologist/cross_ploidy
• Owner: Euphrasiologist
• Created: 2023-04-15T15:29:49.000Z (almost 2 years ago)
• Default Branch: main
• Last Pushed: 2024-03-25T15:05:15.000Z (10 months ago)
• Last Synced: 2024-03-25T17:15:51.073Z (10 months ago)
• Language: JavaScript
• Size: 4.04 MB
• Stars: 0
• Watchers: 1
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md

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README

        
# The emerging importance of cross-ploidy hybridisation and introgression

Max R. Brown, Richard J. Abbott, Alex D. Twyford

Data and figures for the review paper on cross-ploidy hybridisation.

Please cite as:

 Brown, M. R., Abbott, R. J., & Twyford, A. D. (2024). The emerging importance of cross-ploidy hybridisation and introgression. Molecular Ecology, 00, e17315. https://doi.org/10.1111/mec.17315 

This paper is dedicated to the memory of Richard J Abbott, a giant in plant sciences and evolutionary biology of plants. Even in retirement, he remained very active and contributed greatly to this paper.

## Figures

To view the figures, fire up a local server, e.g.

```bash

python3 -m http.server

```

In the home directory (where this README is). Then open `./figures/phylogeny_family_plot.html`.

# Analysis

Run the analyses with:

```bash

Rscript ./src/Box_analysis.R

```

You may need to download the packages:

```R

library(taxonlookup)

library(ape)

library(data.table)

```