https://github.com/ewels/clusterflow-uppmax
UPPMAX specific scripts and resources for Cluster Flow
https://github.com/ewels/clusterflow-uppmax
Last synced: 8 days ago
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UPPMAX specific scripts and resources for Cluster Flow
- Host: GitHub
- URL: https://github.com/ewels/clusterflow-uppmax
- Owner: ewels
- License: gpl-3.0
- Archived: true
- Created: 2015-04-14T10:04:24.000Z (over 11 years ago)
- Default Branch: master
- Last Pushed: 2015-08-17T15:58:00.000Z (almost 11 years ago)
- Last Synced: 2025-01-31T21:15:27.844Z (over 1 year ago)
- Language: Perl
- Size: 186 KB
- Stars: 0
- Watchers: 3
- Forks: 0
- Open Issues: 1
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Metadata Files:
- Readme: README.md
- License: license.txt
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README
# Cluster Flow: UPPMAX Scripts
UPPMAX specific scripts and resources for Cluster Flow.
See the main Cluster Flow repository here: https://github.com/ewels/clusterflow
You can find out more information about UPPMAX here: http://www.uppmax.uu.se
## UPPMAX Genomes
This script adds central UPPMAX reference genomes to `~/.clusterflow/genomes.config` (central and iGenomes).
You can run it as follows:
```
cf-uppmax --add_genomes
```
This will launch an interactive wizard to help you choose which genomes you would like to use, before setting up your genomes config file for you.
## License
Cluster Flow is released with a GPL v3 licence. Cluster Flow is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. For more information, see the licence that comes bundled with Cluster Flow.
## Credits
These scripts and Cluster Flow were written by [Phil Ewels](http://phil.ewels.co.uk), at the [Science for Life Laboratory](http://www.scilifelab.se/) in Stockholm, Sweden.