https://github.com/fabio-cunial/population-sv-simulator
Studies structural variant callers on large simulated populations sequenced with PacBio CCS
https://github.com/fabio-cunial/population-sv-simulator
bioinformatics-pipeline long-reads sequencing-reads structural-variation
Last synced: 8 months ago
JSON representation
Studies structural variant callers on large simulated populations sequenced with PacBio CCS
- Host: GitHub
- URL: https://github.com/fabio-cunial/population-sv-simulator
- Owner: fabio-cunial
- License: mit
- Created: 2022-10-17T18:40:25.000Z (almost 3 years ago)
- Default Branch: main
- Last Pushed: 2023-03-12T15:00:10.000Z (over 2 years ago)
- Last Synced: 2024-12-31T19:55:49.510Z (10 months ago)
- Topics: bioinformatics-pipeline, long-reads, sequencing-reads, structural-variation
- Language: C++
- Homepage:
- Size: 9.44 MB
- Stars: 2
- Watchers: 1
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
- License: LICENSE
Awesome Lists containing this project
README
*synthpop*
Tools to answer questions about: optimal sequencing parameters in a large PacBio CCS sequencing project; comparative performance of existing SV discovery tools; benefits of joint SV discovery over a large population; limits of SV discovery and motivations for new joint tools.
# Overview of the tools
# Questions
## Which read length and coverage to use for detecting SVs in a large population?
## What are the advantages of joint calling?
## Which SVs are difficult to find?