https://github.com/fahimfba/organize-oasis
Organize the entire OASIS1 dataset based on the group name (AD, MCI, CN) locally
https://github.com/fahimfba/organize-oasis
ad brain brain-mri cn mci oasis oasis-1 oasis-script script
Last synced: 2 months ago
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Organize the entire OASIS1 dataset based on the group name (AD, MCI, CN) locally
- Host: GitHub
- URL: https://github.com/fahimfba/organize-oasis
- Owner: FahimFBA
- License: mit
- Created: 2024-04-26T17:29:04.000Z (about 1 year ago)
- Default Branch: main
- Last Pushed: 2024-06-21T16:37:47.000Z (12 months ago)
- Last Synced: 2025-02-05T03:41:18.498Z (4 months ago)
- Topics: ad, brain, brain-mri, cn, mci, oasis, oasis-1, oasis-script, script
- Language: HTML
- Homepage: https://fahimfba.github.io/organize-OASIS/
- Size: 485 KB
- Stars: 0
- Watchers: 1
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
- License: LICENSE
- Citation: CITATION.cff
Awesome Lists containing this project
README
⭐ the repository if you found it helpful. 😊
If you use this repository, please cite it as below.
```markdown
@software{Amin_organize-OASIS_2024,
author = {Amin, Md. Fahim and Khan, Israt},
month = jun,
title = {{organize-OASIS}},
url = {https://github.com/FahimFBA/organize-OASIS},
version = {2.0.4},
year = {2024}
}
```
## Table of Contents
- [Table of Contents](#table-of-contents)
- [Introduction](#introduction)
- [Original Dataset Distribution](#original-dataset-distribution)
🎁 The entire project is live at [fahimfba.github.io/organize-OASIS](https://fahimfba.github.io/organize-OASIS/)
## Introduction
The Open Access Series of Imaging Studies (OASIS) is a project aimed at making neuroimaging data sets of the brain freely available to the scientific community that contains the data of subjects with Nondemented, Very Mild Dementia, Mild Dementia, and Moderate Dementia. The dataset is organized into different directories. This repository contains all the scripts that were used to modify the OASIS-1 given `.xlsx` file and the entire dataset.
## Original Dataset Distribution
We have used the OASIS-1 dataset from [OASIS](https://sites.wustl.edu/oasisbrains/). This is a free dataset, and publicly available to [download](https://sites.wustl.edu/oasisbrains/home/oasis-1/).
The dataset comes with 12 `.tar.gz` files. Each of the
compressed files is around 1.5 gigabytes in size. We have also used the xlsx
file from OASIS-1 with Demographic, and Clinical Data. All of these are
publicly available on OASIS.