https://github.com/fbielejec/plotphylowidget

R widget for plotting phylogenetic trees
https://github.com/fbielejec/plotphylowidget

Last synced: 16 days ago
JSON representation

R widget for plotting phylogenetic trees

• Host: GitHub
• URL: https://github.com/fbielejec/plotphylowidget
• Owner: fbielejec
• Created: 2010-11-05T08:41:12.000Z (about 14 years ago)
• Default Branch: master
• Last Pushed: 2012-11-27T10:17:18.000Z (about 12 years ago)
• Last Synced: 2025-01-04T01:39:38.127Z (21 days ago)
• Language: R
• Homepage:
• Size: 285 KB
• Stars: 1
• Watchers: 2
• Forks: 0
• Open Issues: 1
• Metadata Files:
  • Readme: README

Awesome Lists containing this project

README

        
                        PlotPhylo Widget

  This is free software; you can redistribute it and/or modify

  it under the terms of the GNU General Public License as

  published by the Free Software Foundation; either version 2

  of the License, or (at your option) any later version.

 

   This software is distributed in the hope that it will be useful,

   but WITHOUT ANY WARRANTY; without even the implied warranty of

   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the

   GNU General Public License for more details.

________________________________________________________________________________

                            PURPOSE

                            

R Widget for plotting phylogeographic trees

________________________________________________________________________________

                            RUNNING

Script needs the following R packages installed:

* gWidgets

* ape

* ggplot2

* cairoDevice

Run it by executing PlotPhylo.r script (remember to adjust the path).

* The "Open" button is for loading single tree files (.nex, .tree, .tre).

* "New" opens a new tab for other phylographic trees. The usefull backproduct 

  is it will also catch any other plots R produces while the widget is opened. 

* "Close" closes the currently opened tab.

* "Save" saves the current plot in eps format (vector graphic). 

* "Quit" is obvious :)

________________________________________________________________________________

                            TODO

* Add support for class "multiphylo"

* Add mirroring in y axis functionality

* Allow for saving from inactive tabs