https://github.com/fdrennan/productor
A stripped version of Redditor
https://github.com/fdrennan/productor
Last synced: 3 months ago
JSON representation
A stripped version of Redditor
- Host: GitHub
- URL: https://github.com/fdrennan/productor
- Owner: fdrennan
- Created: 2020-07-20T23:42:51.000Z (over 4 years ago)
- Default Branch: master
- Last Pushed: 2022-12-08T04:26:05.000Z (about 2 years ago)
- Last Synced: 2024-08-13T07:13:24.162Z (6 months ago)
- Language: R
- Size: 16.1 MB
- Stars: 1
- Watchers: 1
- Forks: 2
- Open Issues: 30
-
Metadata Files:
- Readme: README.md
Awesome Lists containing this project
- jimsghstars - fdrennan/productor - A stripped version of Redditor (R)
README
# PRODUCTOR
This project was created to be a template for a data science project. Out of the box, you get fully connected Airflow,
Postgres, R Packages, load balanced APIs through NGINX, and Shiny knitted together by Docker.
## Building the Images
```
docker build -t productor_api --file ./DockerfileApi .
docker build -t productor_rpy --file ./DockerfileRpy .
docker build -t productor_app --file ./DockerfileApp .
docker-compose up -d --build productor_postgres
docker-compose up -d --build productor_initdb
```
# Update environment variables in update_env
```
Rscript update_env.R
```
# Starting in Detached Mode
```
docker-compose up -d
```
# Start with Logs
```
docker-compose up
```
# Stopping
```
docker-compose down
```
# Remove Orphans
```
docker-compose up --remove-orphans
```
# Creating a DAG
When the project is built, go to `localhost:8080` and turn on the `upsert_tidyverse_data` dag. This will execute the DAG (number 1 below) which ultimately executes (3), the R Script which grabs data from the `dlstats` package and upsert the data into Postgres.
See the following files. Airflow doesn't have a native R executor, so you need to wrap the `Rscript` argument in a
bash script. (1) is the DAG which uses a Bash Executor to run (2), a bash file which is wrapper for (3), an R Script
1. Dag Location: `./airflow/dags/productor_basic.py`
2. Bash Script: `./airflow/scripts/R/upsert_tidyverse_data`
3. R Code: `./airflow/scripts/R/upsert_tidyverse_data.R`
### The DAG (1)
```
import airflow
from airflow.operators.bash_operator import BashOperator
from airflow.models import DAG
args = {
'owner': 'Freddy Drennan',
'start_date': airflow.utils.dates.days_ago(2),
'email': ['[email protected]'],
'retries': 2,
'email_on_failure': True,
'email_on_retry': True
}
dag = DAG(dag_id='upsert_tidyverse_data',
default_args=args,
schedule_interval='@daily',
concurrency=1,
max_active_runs=1,
catchup=False)
task_1 = BashOperator(
task_id='upsert_tidyverse_data',
bash_command='. /home/scripts/R/upsert_tidyverse_data',
dag=dag
)
task_1
```
### The Bash Wrapper (2)
```
#!/bin/bash
cd /home/scripts/R/r_files
/usr/bin/Rscript /home/scripts/R/upsert_tidyverse_data.R
```
### The R Script (3)
```
library(productor)
(function() {
con <-
postgres_connector(
POSTGRES_HOST = Sys.getenv('POSTGRES_HOST'),
POSTGRES_PORT = Sys.getenv('POSTGRES_PORT'),
POSTGRES_USER = Sys.getenv('PRODUCTOR_POSTGRES_USER'),
POSTGRES_PASSWORD = Sys.getenv('PRODUCTOR_POSTGRES_PASSWORD'),
POSTGRES_DB = Sys.getenv('PRODUCTOR_POSTGRES_DB')
)
on.exit(expr = {
message('Disconnecting')
dbDisconnect(conn = con)
})
upsert_tidyverse_data(con)
})()
```
### Notable Locations
#### Shiny
http://localhost/
#### API
http://localhost/api/package_downloads
#### Airflow
http://localhost:8080
### Update Docker Repo
```
docker tag local-image:tagname new-repo:tagname
docker push new-repo:tagname
```
```
docker tag productor_rpy:latest fdrennan/productor_app:0.1.0
docker push new-repo:tagname
```
### Docker Commands
```
https://blog.baudson.de/blog/stop-and-remove-all-docker-containers-and-images
```
docker container stop $(docker container ls -aq)
docker container rm $(docker container ls –aq)
# Builds at
https://hub.docker.com/u/fdrennan
#### Specify filepath
docker-compose -f docker-compose-beta.yaml up
# Old Commands. Integrated to DockerHub + Github Hooks
```
docker build -t productor_app_basis --file ./DockerfileApp .
docker tag productor_app_basis:latest fdrennan/productor_app:latest
docker push fdrennan/productor_app:latest
```
```
docker build -t productor_api_basis --file ./DockerfileApi .
docker tag productor_api_basis:latest fdrennan/productor_api:latest
docker push fdrennan/productor_api:latest
```
```
docker build -t productor_rpy_basis --file ./DockerfileRpy .
docker tag productor_rpy_basis:latest fdrennan/productor_rpy:latest
docker push fdrennan/productor_rpy:latest
```
docker-compose -f docker-compose-scratch.yaml pull
docker-compose -f docker-compose-scratch.yaml up -d --build productor_postgres
docker-compose -f docker-compose-scratch.yaml up -d --build productor_initdb
docker-compose -f docker-compose-scratch.yaml restart
docker-compose -f docker-compose-scratch.yaml up
docker-compose -f docker-compose-scratch.yaml down
docker-compose -f docker-compose-dev.yaml pull
docker-compose -f docker-compose-dev.yaml up -d --build productor_postgres
docker-compose -f docker-compose-dev.yaml up -d --build productor_initdb
docker-compose -f docker-compose-dev.yaml restart