https://github.com/federicomarini/plateletopedia

A comprehensive resource for platelet transcriptomics
https://github.com/federicomarini/plateletopedia

Last synced: 21 days ago
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A comprehensive resource for platelet transcriptomics

• Host: GitHub
• URL: https://github.com/federicomarini/plateletopedia
• Owner: federicomarini
• License: other
• Created: 2018-04-25T14:04:57.000Z (over 6 years ago)
• Default Branch: master
• Last Pushed: 2021-07-19T21:32:32.000Z (over 3 years ago)
• Last Synced: 2024-05-09T21:13:17.273Z (6 months ago)
• Language: R
• Size: 389 KB
• Stars: 0
• Watchers: 3
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE
  • Code of conduct: CODE_OF_CONDUCT.md

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README

        
# plateletopedia

TODO: some kind of logo - related to a network of data VS platelets holding each other

This repository contains the code used to assemble the Platelopedia resource.

What does Plateletopedia do?

The Plateletopedia is available at ...

## License

## How to use

## Datasets included

Currently, Plateletopedia includes in-house generated datasets, combined together with

publicly available data. These include:

- 

- 

- -- Rowley 2011 - Genome wide RNA-seq analysis of human and mouse platelet transcriptomes. Blood, 118(14), e101-11.

- -- Bray 2013 - The complex transcriptional landscape of the anucleate human platelet. BMC Genomics, 14(1), 1

- -- Kissopoulou 2013 - Next generation sequencing analysis of human platelet polyA+ mRNAs and rRNA-depleted total RNA. PLoS ONE, 8(12). 

- -- Londin 2014 - The human platelet: strong transcriptome correlations among individuals associate weakly with the platelet proteome. Biology Direct, 9(1), 3. 

- -- Lefrançais 2017 The lung is a site of platelet biogenesis and a reservoir for haematopoietic progenitors. Nature, 544(7648), 105-109. 

- --Best 2015 - RNA-Seq of Tumor-Educated Platelets Enables Blood-Based Pan-Cancer, Multiclass, and Molecular Pathway Cancer Diagnostics. Cancer Cell, 28(5), 666-676. 

- -- Ingolia 2017 - Slowed decay of mRNAs enhances platelet specific translation Blood 2017 129:e38-e48

- -- Best 2017 - Swarm Intelligence-Enhanced Detection of Non-Small-Cell Lung Cancer Using Tumor-Educated Platelets.

## Citing this resource

If you use Plateletopedia, please cite ...

## Contact

If you have questions or comments about Plateletopedia, please contact [Federico Marini]([email protected]).

## Code of Conduct

  

Please note that the plateletopedia project is released with a [Contributor Code of Conduct](https://contributor-covenant.org/version/2/0/CODE_OF_CONDUCT.html). By contributing to this project, you agree to abide by its terms.