https://github.com/felixernst/trna

:package: tRNA: Analyzing tRNA sequences and structures
https://github.com/felixernst/trna

bioconductor r sequences structures trna

Last synced: 6 months ago
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:package: tRNA: Analyzing tRNA sequences and structures

• Host: GitHub
• URL: https://github.com/felixernst/trna
• Owner: FelixErnst
• License: gpl-3.0
• Created: 2018-09-07T12:58:02.000Z (over 7 years ago)
• Default Branch: devel
• Last Pushed: 2024-03-26T21:42:06.000Z (almost 2 years ago)
• Last Synced: 2025-06-22T18:52:00.470Z (8 months ago)
• Topics: bioconductor, r, sequences, structures, trna
• Language: R
• Homepage: https://felixernst.github.io/tRNA/
• Size: 7.64 MB
• Stars: 1
• Watchers: 1
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • Changelog: NEWS
  • License: LICENSE

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README

          
# tRNA 

[![R-CMD-check](https://github.com/FelixErnst/tRNA/workflows/R-CMD-check-bioc-devel/badge.svg)](https://github.com/FelixErnst/tRNA/actions/)

[![BioC Build](https://bioconductor.org/shields/build/release/bioc/tRNA.svg)](http://bioconductor.org/checkResults/release/bioc-LATEST/tRNA/)

[![codecov](https://codecov.io/gh/FelixErnst/tRNA/branch/devel/graph/badge.svg)](https://codecov.io/gh/FelixErnst/tRNA)

[![BioC Years](https://bioconductor.org/shields/years-in-bioc/tRNA.svg)](https://doi.org/doi:10.18129/B9.bioc.tRNA)

The tRNA package allows feature information of tRNAs to be accessed and list of 

tRNA to be subset based on these features. The main purpose is to unify 

overlapping functions from the

[`tRNAscanImport`](https://doi.org/doi:10.18129/B9.bioc.tRNAscanImport) and 

[`tRNAdbImport`](https://github.com/FelixErnst/tRNAdbImport) packages.

The functionality is currently under development and may change. The package 

expects a `GRanges` object with certain columns as input. The following columns

are a requirement: `tRNA_length`, `tRNA_type`, `tRNA_anticodon`, `tRNA_seq`,

`tRNA_str`, `tRNA_CCA.end`. Outputs of `tRNAscanImport` and `tRNAdbImport` meet

these requirements.

## Installation

The current version of the `tRNA` package is available from Bioconductor.

 

```{r}

BiocManager::install("tRNA")

# Load and attach thepackage

library("tRNA")

```

## Functions

Have a look at the vignette for an overview of the functionality. Additional

functions are planned to be added in the future.