https://github.com/fertiglab/spacemarkersguide
https://github.com/fertiglab/spacemarkersguide
Last synced: 6 months ago
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- Host: GitHub
- URL: https://github.com/fertiglab/spacemarkersguide
- Owner: FertigLab
- Created: 2023-03-14T16:41:55.000Z (over 3 years ago)
- Default Branch: main
- Last Pushed: 2023-07-13T14:49:48.000Z (almost 3 years ago)
- Last Synced: 2025-10-25T15:35:03.823Z (8 months ago)
- Language: HTML
- Homepage: https://fertiglab.github.io/SpaceMarkersGuide/
- Size: 2.4 MB
- Stars: 0
- Watchers: 0
- Forks: 0
- Open Issues: 0
-
Metadata Files:
- Readme: README.md
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README
# SpaceMarkers
An R/Bioconductor software tool to identify genes associated with latent space interactions in spatial transcriptomics.
## Citation
If you use the SpaceMarkers software please cite:
Atul Deshpande, Melanie Loth, et al.,
[Uncovering the spatial landscape of molecular interactions within the tumor microenvironment through latent spaces](https://doi.org/10.1101/2022.06.02.490672).
*bioRxiv* 2022. doi:10.1101/2022.06.02.490672
## Installation
You can install SpaceMarkers directly from the Github source.
```
install.packages("remotes")
remotes::install_github("FertigLab/SpaceMarkers", dependencies = TRUE, build_vignettes = TRUE)
```