https://github.com/ffstghc/blastscript

My first Python script: a simple algorithm to compare sequences with variable input region not relying on any additional packages.
https://github.com/ffstghc/blastscript

bioinformatics blast script

Last synced: 12 months ago
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My first Python script: a simple algorithm to compare sequences with variable input region not relying on any additional packages.

• Host: GitHub
• URL: https://github.com/ffstghc/blastscript
• Owner: ffstghc
• Created: 2021-11-02T18:58:17.000Z (over 4 years ago)
• Default Branch: master
• Last Pushed: 2021-11-03T16:47:03.000Z (over 4 years ago)
• Last Synced: 2025-01-07T21:12:11.180Z (about 1 year ago)
• Topics: bioinformatics, blast, script
• Language: Python
• Homepage:
• Size: 3.91 KB
• Stars: 0
• Watchers: 1
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: Readme.md

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README

          
Simple BLAST algorithm that takes in two sequences 

that were created by https://web.expasy.org/randseq and 

searches for similarities or mutations element by element.

**Features**

- Choose between three search modes:

  - Sequence matches

  - Sequence mutations

  - Defined sequence

- Variable Input region (start + stop position)

- Output of sequence length 

- Output of position of findings ("X123Y") (for matches / mutations)

- Output of total amount of findings (for matches / mutations)