https://github.com/fhdsl/anvil_data_subsetting

Tutorial for running the fastq_subsample WDL workflow on AnVIL!
https://github.com/fhdsl/anvil_data_subsetting

anvil genomics wdl wdl-workflow workflow

Last synced: about 2 months ago
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Tutorial for running the fastq_subsample WDL workflow on AnVIL!

• Host: GitHub
• URL: https://github.com/fhdsl/anvil_data_subsetting
• Owner: fhdsl
• License: cc-by-4.0
• Created: 2023-08-28T14:45:17.000Z (over 1 year ago)
• Default Branch: main
• Last Pushed: 2023-12-14T14:16:21.000Z (about 1 year ago)
• Last Synced: 2023-12-14T15:31:56.719Z (about 1 year ago)
• Topics: anvil, genomics, wdl, wdl-workflow, workflow
• Language: CSS
• Homepage: https://hutchdatascience.org/AnVIL_Data_Subsetting/
• Size: 14.6 MB
• Stars: 0
• Watchers: 2
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE.md
  • Code of conduct: code_of_conduct.md

Awesome Lists containing this project

README

        
# AnVIL Book: Subsetting Your Data with WDL

[![Render Bookdown and Coursera](https://github.com/jhudsl/OTTR_Template/actions/workflows/render-all.yml/badge.svg)](https://github.com/jhudsl/OTTR_Template/actions/workflows/render-all.yml)

This course was created from [the AnVIL Template](https://github.com/jhudsl/AnVIL_bookdown_style), which is based on [the OTTR Template](https://github.com/jhudsl/OTTR_Template)

You can see the rendered course material here: https://hutchdatascience.org/AnVIL_Data_Subsetting/

## About this course

This course introduces a WDL workflow that can be used on AnVIL to subset data for teaching, benchmarking, and more.

## Learning Objectives

This course will teach learners to:  

- Browse Dockstore to find the subsetting workflow

- Set up the data subsetting workflow

- Check the workflow output

## Encountering problems?

If you are encountering any problems with this course, please file a [GitHub issue](https://github.com/fhdsl/AnVIL_Data_Subsetting/issues).


All materials in this course are licensed under a Creative Commons Attribution 4.0 International License unless noted otherwise.