https://github.com/fhdsl/anvil_sra_data

Pull Sequence Read Archive (SRA) data into AnVIL
https://github.com/fhdsl/anvil_sra_data

anvil course genomics module ncbi-database sequence-read-archive

Last synced: about 1 month ago
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Pull Sequence Read Archive (SRA) data into AnVIL

• Host: GitHub
• URL: https://github.com/fhdsl/anvil_sra_data
• Owner: fhdsl
• License: cc-by-4.0
• Created: 2023-02-14T15:51:08.000Z (over 3 years ago)
• Default Branch: main
• Last Pushed: 2025-05-05T13:29:03.000Z (about 1 year ago)
• Last Synced: 2025-05-05T14:46:14.621Z (about 1 year ago)
• Topics: anvil, course, genomics, module, ncbi-database, sequence-read-archive
• Language: CSS
• Homepage: https://hutchdatascience.org/AnVIL_SRA_Data/
• Size: 19.6 MB
• Stars: 0
• Watchers: 3
• Forks: 0
• Open Issues: 2
• Metadata Files:
  • Readme: README.md
  • License: LICENSE.md
  • Code of conduct: code_of_conduct.md

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README

          
# SRA Data on ANVIL

[![Render Bookdown and Coursera](https://github.com/jhudsl/OTTR_Template/actions/workflows/render-all.yml/badge.svg)](https://github.com/jhudsl/OTTR_Template/actions/workflows/render-all.yml)

This course was created from [the AnVIL Template](https://github.com/jhudsl/AnVIL_bookdown_style), which is based on [the OTTR Template](https://github.com/jhudsl/OTTR_Template)

You can see the rendered course material here: https://hutchdatascience.org/AnVIL_SRA_Data/

## About this course

This course helps AnVIL Users bring SRA data to ANVIL.

## Learning Objectives

This course will teach learners to:

-  Use a WDL Workflow on AnVIL to bring in an example SRA accession.

-  Use WDL to import multiple SRA accessions at once.

-  Customize which SRA accessions will be brought to AnVIL.

## Encountering problems?

If you are encountering any problems with this course, please file a GitHub issue or contact us at {Some email or web address with a contact form}.


All materials in this course are licensed under a Creative Commons Attribution 4.0 International License unless noted otherwise.