https://github.com/fhdsl/anvil_sra_data

Pull Sequence Read Archive (SRA) data into AnVIL
https://github.com/fhdsl/anvil_sra_data

anvil course genomics module ncbi-database sequence-read-archive

Last synced: about 10 hours ago
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Pull Sequence Read Archive (SRA) data into AnVIL

• Host: GitHub
• URL: https://github.com/fhdsl/anvil_sra_data
• Owner: fhdsl
• License: cc-by-4.0
• Created: 2023-02-14T15:51:08.000Z (almost 2 years ago)
• Default Branch: main
• Last Pushed: 2024-08-06T15:56:28.000Z (3 months ago)
• Last Synced: 2024-08-07T02:31:33.065Z (3 months ago)
• Topics: anvil, course, genomics, module, ncbi-database, sequence-read-archive
• Language: CSS
• Homepage: https://hutchdatascience.org/AnVIL_SRA_Data/
• Size: 25.5 MB
• Stars: 0
• Watchers: 3
• Forks: 0
• Open Issues: 7
• Metadata Files:
  • Readme: README.md
  • License: LICENSE.md
  • Code of conduct: code_of_conduct.md

Awesome Lists containing this project

README

        


## AnVIL Template

Based on [_Open-source Tools for Training Resources (OTTR)_](https://github.com/jhudsl/OTTR_Template)

The purpose of this template and is to make publishing maintenance for AnVIL content across multiple different platforms _less painful_.

_This template helps you_:   

- Edit and write an AnVIL course in [RMarkdown files](https://rmarkdown.rstudio.com/) and have it published to multiple different platforms:

  - [Leanpub](https://leanpub.com/bookstore?type=course)

  - [Bookdown](https://bookdown.org/)

  - [Coursera](https://www.coursera.org/)

- Have [Github action robots](https://github.com/jhudsl/OTTR_Template/wiki/How-to-set-up-and-customize-GitHub-actions-robots) do your repetitive tasks like spell check and re-rendering. 

- Use [automagic conversion](https://github.com/jhudsl/ottrpal) to ease the lift of prepping the material for different platforms' formats.

- Use [our Docker image](https://hub.docker.com/repository/docker/jhudsl/course_template) for consistency across authors as well as to help you [avoid dependency hell](https://en.wikipedia.org/wiki/Dependency_hell). 



## To Get Started

- Go to the [OTTR Wiki page](https://github.com/jhudsl/OTTR_Template/wiki/Getting-started)

- Please take a look at the [code of conduct](./code_of_conduct.md).

- If you encounter any problems or have improvement ideas for this template repository, please [file an issue](https://github.com/jhudsl/AnVIL_bookdown_style/issues/new/choose)! Issues for the parent repository (the OTTR template repository) are also very much appreciated and can be submitted [here](https://github.com/jhudsl/OTTR_Template/issues/new/choose).

# {Course Name}

[![Render Bookdown and Coursera](https://github.com/jhudsl/OTTR_Template/actions/workflows/render-all.yml/badge.svg)](https://github.com/jhudsl/OTTR_Template/actions/workflows/render-all.yml)

This course was created from [the AnVIL Template](https://github.com/jhudsl/AnVIL_bookdown_style), which is based on [the OTTR Template](https://github.com/jhudsl/OTTR_Template)

You can see the rendered course material here: {Link to rendered bookdown and/or to the Leanpub. Will look something like: https://jhudatascience.org/{Course_Name}}

## About this course

This course introduces {info on what this course introduces}

## Learning Objectives

This course will teach learners to:  

- {You can use https://www.bobpikegroup.com/trainer-blog/5-steps-to-writing-clear-and-measurable-learning-objectives to define some learning objectives here}

- {More learning objectives}

## Encountering problems?

If you are encountering any problems with this course, please file a GitHub issue or contact us at {Some email or web address with a contact form}.


All materials in this course are licensed under a Creative Commons Attribution 4.0 International License unless noted otherwise.