https://github.com/fhdsl/wdl-sandbox

sandbox for WDL_Workflows_guide
https://github.com/fhdsl/wdl-sandbox

Last synced: about 2 months ago
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sandbox for WDL_Workflows_guide

• Host: GitHub
• URL: https://github.com/fhdsl/wdl-sandbox
• Owner: fhdsl
• Created: 2023-11-16T22:46:39.000Z (about 1 year ago)
• Default Branch: main
• Last Pushed: 2024-04-02T17:54:03.000Z (9 months ago)
• Last Synced: 2024-04-02T18:58:01.928Z (9 months ago)
• Language: WDL
• Size: 1.89 MB
• Stars: 0
• Watchers: 2
• Forks: 1
• Open Issues: 0
• Metadata Files:
  • Readme: readme.md

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README

        
### where to get the test data

fastqs: in this repo, in `data/`

reference files: https://data.broadinstitute.org/snowman/hg19/

dbsnp files (direct DL):

* https://data.broadinstitute.org/snowman/hg19/variant_calling/vqsr_resources/Exome/v2/dbsnp_138.b37.vcf.gz

* https://data.broadinstitute.org/snowman/hg19/variant_calling/vqsr_resources/Exome/v2/dbsnp_138.b37.vcf.gz.tbi