https://github.com/finnickniu/lerp

https://github.com/finnickniu/lerp

Last synced: 2 months ago
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• Host: GitHub
• URL: https://github.com/finnickniu/lerp
• Owner: finnickniu
• Created: 2021-08-29T04:30:18.000Z (over 3 years ago)
• Default Branch: main
• Last Pushed: 2021-11-27T09:11:17.000Z (about 3 years ago)
• Last Synced: 2024-10-14T23:42:29.312Z (3 months ago)
• Language: Python
• Size: 174 KB
• Stars: 5
• Watchers: 1
• Forks: 1
• Open Issues: 0
• Metadata Files:
  • Readme: readme.md

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README

        
# LERP : Label-dependent and event-guided interpretable disease risk prediction using EHRs

## This is the code for the LERP.

![image](https://github.com/finnickniu/LERP/blob/main/IMG/LERP.png)

## Dataset

1. The dataset used is MIMIC-III, you should download it from https://physionet.org/content/mimiciii/1.4/ first.

2. Then, you should use MIMI-III benchmark tool to generate the Phenotype classification.

3. Next, you should use the py files under the folder of data_processing.

```

 python data_processing/generate_event.py 

 python data_processing/generate_text.py

 data_processing/split_data.py 

```

## Training 

After you generate the dataset, you could use:

``` 

    python trainer_text_event.py

```

to train the LERP

## Evaluation and case study

You could use the following commands to evaluate the LERP model and check the case study result.

```

    python evaluation_text_event.py

    python case_study_text_event.py

```