https://github.com/finnishcancerregistry/iarccrgtools

Use IARC CRG Tools from the comfort of your R session.
https://github.com/finnishcancerregistry/iarccrgtools

automation cancer-registry data-processing epidemiology iarc-crg-tools public-health r-integration windows-executable-interface windows-integration

Last synced: 7 months ago
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Use IARC CRG Tools from the comfort of your R session.

• Host: GitHub
• URL: https://github.com/finnishcancerregistry/iarccrgtools
• Owner: FinnishCancerRegistry
• License: other
• Created: 2018-11-07T21:14:32.000Z (almost 7 years ago)
• Default Branch: master
• Last Pushed: 2025-04-11T07:27:26.000Z (7 months ago)
• Last Synced: 2025-04-12T19:06:57.084Z (7 months ago)
• Topics: automation, cancer-registry, data-processing, epidemiology, iarc-crg-tools, public-health, r-integration, windows-executable-interface, windows-integration
• Language: R
• Homepage:
• Size: 276 KB
• Stars: 0
• Watchers: 1
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • Changelog: NEWS.md
  • License: LICENSE

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README

          


# Package `iarccrgtools`

Utilities for using IARC CRG Tools on Windows via R.

[![R-CMD-check](https://github.com/WetRobot/iarccrgtools/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/WetRobot/iarccrgtools/actions/workflows/R-CMD-check.yaml)

# Recommended installation

```r

devtools::install_github(

  "FinnishCancerRegistry/iarccrgtools",

  ref = readline("enter latest tag on github: ")

)

```

# Example

```r

dir_path <- tempdir()

iarccrgtools::iarc_workdir_set(dir_path)

tool_name <- "check"

subset <- "mandatory"

iarc_df <- iarccrgtools::tool_colnameset_example_dataset(

  paste0(subset, "_", tool_name), n.rows = 10L

)

results <- iarccrgtools::interact_with_tool(

  iarc_df, tool.name = tool_name, clean = TRUE

)

result_df <- iarccrgtools::connect_tool_results_to_observations(

  record.ids = iarc_df[["record_id"]], tool.results = results

)

```