https://github.com/fjossinet/caagle

a Comprehensive dAtAbase for Candida GLabrata
https://github.com/fjossinet/caagle

Last synced: 14 days ago
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a Comprehensive dAtAbase for Candida GLabrata

• Host: GitHub
• URL: https://github.com/fjossinet/caagle
• Owner: fjossinet
• License: mit
• Created: 2016-03-17T09:03:41.000Z (almost 9 years ago)
• Default Branch: master
• Last Pushed: 2016-10-20T12:59:53.000Z (about 8 years ago)
• Last Synced: 2024-11-06T12:19:42.791Z (2 months ago)
• Language: JavaScript
• Size: 25.8 MB
• Stars: 0
• Watchers: 2
• Forks: 0
• Open Issues: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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README

        
Caagle - A functional genomic database on *Candida glabrata* and close species

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#Prerequisites

To run this project, you need:

* Python >= 2.7 (but not 3.x)

* several Python libraries:

    * [Flask microframework](http://flask.pocoo.org)

    * [PyRNA](https://github.com/fjossinet/RNA-Science-Toolbox)

    * [PyMongo](https://api.mongodb.org/python/current/)

* [MongoDB](https://www.mongodb.org/)

* [Seqmap](http://www-personal.umich.edu/~jianghui/seqmap/)

#Quickstart

* start the MongoDB server

* import some [Candida Genome Database](http://www.candidagenome.org/) content by running the script import_CGD.py in the scripts directory

* launch the website by running the script init.py

* open your browser and go to http://127.0.0.1:5000