https://github.com/flekschas/enhancer-gene-vis

A tool for visualizing ABC enhancer-gene connections in the context of genetic variants.
https://github.com/flekschas/enhancer-gene-vis

enhancer-gene enhancers variants visualization

Last synced: 7 days ago
JSON representation

A tool for visualizing ABC enhancer-gene connections in the context of genetic variants.

• Host: GitHub
• URL: https://github.com/flekschas/enhancer-gene-vis
• Owner: flekschas
• License: apache-2.0
• Created: 2020-06-17T16:09:38.000Z (almost 5 years ago)
• Default Branch: master
• Last Pushed: 2023-05-03T05:40:41.000Z (about 2 years ago)
• Last Synced: 2025-04-20T17:37:43.137Z (29 days ago)
• Topics: enhancer-gene, enhancers, variants, visualization
• Language: TypeScript
• Homepage: https://flekschas.github.io/enhancer-gene-vis
• Size: 39.6 MB
• Stars: 12
• Watchers: 2
• Forks: 4
• Open Issues: 7
• Metadata Files:
  • Readme: README.md
  • License: LICENSE
  • Citation: CITATION.bib

Awesome Lists containing this project

README

        


  ABC Enhancer-Gene Visualization





  

  **A tool for visually exploring ABC enhancer-gene connections across biosamples in the context of genetic variants**

  








  

  ![User Interface](https://user-images.githubusercontent.com/932103/108857083-b40b3e00-75b8-11eb-88aa-0ff00c4bb8bc.png)

  



**Website:** [https://flekschas.github.io/enhancer-gene-vis](https://flekschas.github.io/enhancer-gene-vis)

**Paper:** [Nasser et al., "Genome-wide enhancer maps link risk variants to disease genes", Nature, 2021.](https://www.nature.com/articles/s41586-021-03446-x)

This web-based visualization provides access to genome-wide ABC enhancer-gene connections across 131 biosamples and allows you to correlated the enhancers with genetic variants.

## How?

_Coming Soon! Meanwhile please [read the introduction](https://flekschas.github.io/enhancer-gene-vis/?dai=true&dal=indicator&darn=true&e=chr10.81229112&egce=number&egi=true&egp=false&eri=solid&f=rs1250566&g=&s=chr10.80948032&vs=pValue&vt=VF5-RDXWTxidGMJU7FeaxA&w=intro)._

---

### Development

Setting up a development environment



#### Installation

```bash

$ git clone https://github.com/flekschas/enhancer-gene-vis && enhancer-gene-vis

$ npm install

```

#### Commands

**Developmental server**: `npm start`

**Production build**: `npm run build`

**Demo build**: `npm run build-demo`